Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1187 ATGAAGGTGGGGTTGAGGGCGGTGTTTTCAGGAAGAGAAGCAACACAGCAAAACAGTTTGGTTCTTAAGGCTCTGTTTGCTGCTTGGTATTCAAGAGCCTACACCCAACGTTATCCCAACCATCAATTGAGGATAGCAAAAGGGAAGAGGCAAAGAGGAGCATCCATGGCTCTGCTCTGTGGTTCATCTTCGGTGACCTTCCTTTCATCTTCTGGTAAATCTTCCTATACTTCTTCCCACAATGGCAATGCCAAAACAGCATTTCTTGGCTTCCAATTGGCATCACCAAAGCCTTCTATACGCACCAATTTGGGCTTCAATTCTAGGGCAAGTTCTCAGGTGCTTTGCCAGGACCTCTCCATTGTCCCTAAAGATGAACGTTGGATGTTCGAGGAATCCGAAATCAATGGCCCGGACATTTGGAACAAGACTTGGTATCCAAAAGCAGCAGATCATGTGAACACAGATAAACCATGGTACATTGTTGATGCTACTGATAAAATTCTTGGAAGACTAGCATCAACTATTGCAATTTATATCCGAGGGAAAAATTTGGCGACCTATACTCCCAGTGTGGACATGGGTGCATTTGTAATTGTGGTTAATGCAGAAAAAATTGCTGTATCCGGAAAAAAGAGGACCCAAAAGCTTTATAGGAGGCATTCAGGACGACCTGGTGGTATGAAAGTAGAGACATTTGCCCAACTACAGGCCAGAATTCCAGAAAGAATTATTGAACATGCAGTTCGTGGCATGCTTCCAAAGGGGAGGCTTGGCAGACAACTGTTCAACCACCTGAAGGTTTATAAGGGCCCTGATCATCCTCATCAGGCTCAAAAGCCCATTGAGTTACCAATAAGGGACAAAAGAATACAATGGCAGAGATAG 888 0.4437 MKVGLRAVFSGREATQQNSLVLKALFAAWYSRAYTQRYPNHQLRIAKGKRQRGASMALLCGSSSVTFLSSSGKSSYTSSHNGNAKTAFLGFQLASPKPSIRTNLGFNSRASSQVLCQDLSIVPKDERWMFEESEINGPDIWNKTWYPKAADHVNTDKPWYIVDATDKILGRLASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGGMKVETFAQLQARIPERIIEHAVRGMLPKGRLGRQLFNHLKVYKGPDHPHQAQKPIELPIRDKRIQWQR 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1187 295 Hamap 50S ribosomal protein L13 [rplM]. 159 285 IPR005822 GO:0003735|GO:0005840|GO:0006412
Alju10g1187 295 FunFam 50S ribosomal protein L13 142 286 - -
Alju10g1187 295 Pfam Ribosomal protein L13 158 275 IPR005822 GO:0003735|GO:0005840|GO:0006412
Alju10g1187 295 NCBIfam 50S ribosomal protein L13 153 284 IPR005823 GO:0003735|GO:0005840|GO:0006412
Alju10g1187 295 ProSitePatterns Ribosomal protein L13 signature. 249 271 IPR023563 GO:0003735|GO:0005840|GO:0006412
Alju10g1187 295 PANTHER RIBOSOMAL PROTEIN L13 145 293 IPR005822 GO:0003735|GO:0005840|GO:0006412
Alju10g1187 295 CDD Ribosomal_L13 159 272 IPR005822 GO:0003735|GO:0005840|GO:0006412
Alju10g1187 295 Gene3D Ribosomal protein L13 148 291 IPR036899 GO:0003735|GO:0005840|GO:0006412
Alju10g1187 295 SUPERFAMILY Ribosomal protein L13 154 286 IPR036899 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1187 Alju-ChrAlju10 12764198 12768351 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1187 161 285 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 31.061 8.88e-07 47.0