Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1143 ATGTCTCTGAGAAGCATTTTTCGTTCTCGGAAATTCTGCAGATCCTTGAAGGAGGTCAGGGTCATCGAGGAAGATGAGCGGAAGGGGCGGATTGTCGGTGATTCCGACACGGACTCTCCTCCTTACGGCCGTTCATGGGCCACTATGCTGCCGGAGCTTCTAGGGGAGATCATTCGCCGTGTTGAGGTCACCGAGGACCAGTGGCCTAACCGCCAAAACGTCGTTGCTTGCGCCTGCGTTTGCAAGAGGTGGAGGGATATCACTAAGGAGATCGTGCGGTTCCCTTCGCGCAACTACGGCAGAATTACTTTTCCTTCTTGTCTTAAGCAGCCAGGACCACGTGACTCACCCCACCAGTGTATTATAAAGAGGGATAAGAAGACTTCGACATTTCACCTTTATCTTGCCCTTACTCCACCATCATTCACAGATAGAGGTAAGTTTCTCTTGGCAGCTAAGAGATATAGGCGTGGTTCTGGTATTGACTATGTACTTTCACTTGATGCTGATGACATATCGCAAGGAAGTAATGCATATGTTGGAAAGTTAAGCTCAGATTTTCTTGGCACGAACTTCACAATCTATGATAGCCAGCCACCCCATTGTGGTGCAAGGCCTTCAAATGGAAAGGCCAGCCGTCGTTTTGCCTCCAAGCAAATATGCCCTCAAGTTCCTGCTGGTAACTTTGAGGTGGGGCATGTATCATACAAGTTCAACCTTTTGAAGTCAAGAGGGCCAAGGAGGATGGTTTGCTTACTTCAGCTCCCAAGCCAATCATCAGGAGCAAGTTCAGATAGCAGATCTCTGAATGTTCACAAGACAATCAATACAGAACAAGCTGCCTCAGAATACTCAATCTTGAAAAACAAATCTCCGAGGTGGCACGAGCATTTGCAATGCTGGTGCTTAAATTTCCACGGTCGTGTGACTGTAGCTTCGGTGAAGAACTTTCAGCTGGTTGCTACGGTGGACCAAAGCCAACCAGGAGGGAAAGGAGACGAGGAAATGGTTCTTCTTCAATTTGGGAAAGTAGGGGATGATACTTTCACTATGGACTACAGGAAGCCCCTATCTGCATTTCAGGCCTTTGCCATATGCCTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1134 0.478 MSLRSIFRSRKFCRSLKEVRVIEEDERKGRIVGDSDTDSPPYGRSWATMLPELLGEIIRRVEVTEDQWPNRQNVVACACVCKRWRDITKEIVRFPSRNYGRITFPSCLKQPGPRDSPHQCIIKRDKKTSTFHLYLALTPPSFTDRGKFLLAAKRYRRGSGIDYVLSLDADDISQGSNAYVGKLSSDFLGTNFTIYDSQPPHCGARPSNGKASRRFASKQICPQVPAGNFEVGHVSYKFNLLKSRGPRRMVCLLQLPSQSSGASSDSRSLNVHKTINTEQAASEYSILKNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEEMVLLQFGKVGDDTFTMDYRKPLSAFQAFAICLTSFGTKLACE 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1143 377 CDD F-box_AtTLP-like 46 90 - -
Alju10g1143 377 ProSitePatterns Tub family signature 1. 305 318 IPR018066 -
Alju10g1143 377 SUPERFAMILY Tubby C-terminal domain-like 98 377 IPR025659 -
Alju10g1143 377 Pfam Tub family 108 372 IPR000007 -
Alju10g1143 377 ProSitePatterns Tub family signature 2. 362 377 IPR018066 -
Alju10g1143 377 PRINTS Tubby superfamily signature 334 353 IPR000007 -
Alju10g1143 377 PRINTS Tubby superfamily signature 228 255 IPR000007 -
Alju10g1143 377 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Alju10g1143 377 PRINTS Tubby superfamily signature 305 321 IPR000007 -
Alju10g1143 377 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Alju10g1143 377 PRINTS Tubby superfamily signature 355 377 IPR000007 -
Alju10g1143 377 PRINTS Tubby superfamily signature 287 304 IPR000007 -
Alju10g1143 377 Pfam F-box domain 51 93 IPR001810 GO:0005515
Alju10g1143 377 PANTHER TUBBY-RELATED 23 375 - -
Alju10g1143 377 Gene3D Tubby Protein; Chain A 103 377 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1143 Alju-ChrAlju10 11637872 11641231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1143 45 377 TUB Transcription Factor Family AT1G53320 76.696 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Alju10g1143 Tub 3.7e-100 CL0395