Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1114 ATGTCGCATTCTGGGAATCCCATTTCCGAGATAGGACTCGATGCTCTCAACCACCGATTCCACGACTCTTTGAGCTGTGAGGCTAACAAGCCGGATTTTCGAGAACTCGACTTGGGCTCGCCGGTTTCGCCATTGCGGACTCGTCACAGTGTACCTACTGCTAGTGCCAGTGGACTCACTACTACCAGTAGTAGTTCGAGTTCATCTGGATCGGTCTCTGGACGAAACGGGTACAAACCGGTCGCGAAACGATCTGATTACGATCCGAATAACCACTCCGGCGAACTCTCTGGCTCCGGCGAGAACAGTCCGACCGCCGCAGGGAATGCCAGGAACTTCAAATCGCCTCAAGCAAGATCAGATTCCAAGTCCACCCAACCGTTAATTTACTCCGGCCAAAGCTCCTCCGTGAATTCACCGCCGCCAAATTTTCTTCCCACAGGCAATATCTGTCCGTCCGGAAAGATTCTGAAGACCTTTGCCGCGGCCACTCGGAGCTCCAGGACTGACGTTTTGGGTTCTGGGATAGGATATTACGGCCATGGAAGCATAATGCGGGGCGGTGCGACTTCTAAAGGCAATGCTGGAGGAACGACCGGCGCGGCCAACGCGAGGGCGAGTGGCGGTGGCGTCGTTGCTGAGTCAGTGAAGCGAGCCGCGGTGAGTGTGGATGCAGAAGACCTGAAGAGAGCAGGGAACGAGCAGTACAAGAGGGGTCACTTCGCAGAGGCTCTGAGTCTATACGATCGAGCAATTGCATTATCCCCTGCTAACGCAGCCTACCGGAGCAACCGTGCAGCTGCATTGACGGGTTTGGGACGGTTGGCTGAGGCTGTGAGGGAGTGTGAGGAGGCTGTGAGGTTAGATCCCAATTATGGGAGGGCACGTCAGCGTTTGGCCTCTCTTTTTCTAAGGTTAGGACAAGTTGAGAATGCCAGGAAACATCTCTTCTGCCCTGGGCTGCCACCTGATCCTTCTGAGTTGCAGAAATTGCAACTAGTGGAGAAGCATATCGGGAAATGTACAGATTCCCGGAAGATAGGTGATTGGAAAAGTGTGCTCAGGGAAATTGATGCAGCCATTTCTTCCGGAGCGGACTCTTGTCCTGAGCTCTTAATGTGTGGAGCAGAAGCCCTTTTGAAACTCCATCAAGTTGATGATGCGGAATCAAGTCTGTTAAACAACCCCAAATTAGAACCATATACTAACTCCTCTTCACAGGCAAGATTTTTTGGGATCCTTTCTGAAGCTTATTCTTTCTTTGTGAGAGCTCAGATTGAGATGGCTGTGGGAAGATTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTGGTCTGATTGATCCTCGAAACATTGAGGTTACCGTTTTACTAAAAAATGTAAGGATGGTGGCTCGAGCTCGAGCTCATGGCAATGATCTTTTCAAATCTGAAAGGTTCACTGAAGCTTGCTCAGCATATGGGGAAGGTTTGAGGCTGGATCCTTCAAACTCGGTTCTCTACTGCAATAGAGCAGCTTGCTGGTTTAAGCTTGGGCACTGGGAACAATCAATTGAGGATTGCAATCAAGCTTTACATTTCCAACCTAATTACACAAAAGCTCTTCTTCGTAGGGCTGCATCTAATAGCAAGTTAGAAAGGTGGGCGGAAGCTGTCAAAGATTATGAGATCTTGCGTAGAGATCTTCCGGATGACAGTGAAGTGGCTGAAGCTCTGTTTCATGCAATAGTGGCATTAAAGAAATCTCGTGGAGAGGAAGTGCATGATTTGAAATTTGGTGGTGAGGTGGAAGAAGTATCAAGTCTTGAGCAATTTAGAGCAGCAATAGCTTTACCAGGTGTTTCTGTTGTCCATTTTGAAATTGCATCTAACCCACAATGCAAGCAAATCTCACCATTTATGGGTACATTATGTGGCCGCTATCCTTCCATTAATTTCCTCAAGGTGGATATTCAAGAATGCCCAACAGTTGCAACGGCTGAGAGCATTAGAATCGTACCAACTTTCAAGATCTACAAGAATGGCTGTCGTGTGAAGGAAATCGTGTGTCCTAGTCGCGACATGTTGGAACACTCTGTGAGGCATTATAGCTTTTAG 2094 0.4862 MSHSGNPISEIGLDALNHRFHDSLSCEANKPDFRELDLGSPVSPLRTRHSVPTASASGLTTTSSSSSSSGSVSGRNGYKPVAKRSDYDPNNHSGELSGSGENSPTAAGNARNFKSPQARSDSKSTQPLIYSGQSSSVNSPPPNFLPTGNICPSGKILKTFAAATRSSRTDVLGSGIGYYGHGSIMRGGATSKGNAGGTTGAANARASGGGVVAESVKRAAVSVDAEDLKRAGNEQYKRGHFAEALSLYDRAIALSPANAAYRSNRAAALTGLGRLAEAVRECEEAVRLDPNYGRARQRLASLFLRLGQVENARKHLFCPGLPPDPSELQKLQLVEKHIGKCTDSRKIGDWKSVLREIDAAISSGADSCPELLMCGAEALLKLHQVDDAESSLLNNPKLEPYTNSSSQARFFGILSEAYSFFVRAQIEMAVGRFENAVTAAEKAGLIDPRNIEVTVLLKNVRMVARARAHGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGHWEQSIEDCNQALHFQPNYTKALLRRAASNSKLERWAEAVKDYEILRRDLPDDSEVAEALFHAIVALKKSRGEEVHDLKFGGEVEEVSSLEQFRAAIALPGVSVVHFEIASNPQCKQISPFMGTLCGRYPSINFLKVDIQECPTVATAESIRIVPTFKIYKNGCRVKEIVCPSRDMLEHSVRHYSF 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1114 697 Pfam Tetratricopeptide repeat 499 530 IPR001440 GO:0005515
Alju10g1114 697 MobiDBLite consensus disorder prediction 46 75 - -
Alju10g1114 697 Gene3D Tetratricopeptide repeat domain 223 581 IPR011990 GO:0005515
Alju10g1114 697 SUPERFAMILY TPR-like 344 461 IPR011990 GO:0005515
Alju10g1114 697 CDD TRX_family 602 689 - -
Alju10g1114 697 Gene3D Glutaredoxin 582 695 - -
Alju10g1114 697 SUPERFAMILY TPR-like 224 555 IPR011990 GO:0005515
Alju10g1114 697 SUPERFAMILY Thioredoxin-like 500 695 IPR036249 -
Alju10g1114 697 MobiDBLite consensus disorder prediction 91 144 - -
Alju10g1114 697 SMART tpr_5 497 530 IPR019734 GO:0005515
Alju10g1114 697 SMART tpr_5 417 450 IPR019734 GO:0005515
Alju10g1114 697 SMART tpr_5 259 292 IPR019734 GO:0005515
Alju10g1114 697 SMART tpr_5 466 496 IPR019734 GO:0005515
Alju10g1114 697 SMART tpr_5 531 564 IPR019734 GO:0005515
Alju10g1114 697 SMART tpr_5 225 258 IPR019734 GO:0005515
Alju10g1114 697 ProSiteProfiles TPR repeat profile. 225 258 IPR019734 GO:0005515
Alju10g1114 697 MobiDBLite consensus disorder prediction 28 146 - -
Alju10g1114 697 Pfam Tetratricopeptide repeat 231 291 - -
Alju10g1114 697 Pfam Thioredoxin 602 687 IPR013766 -
Alju10g1114 697 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 21 694 IPR044534 -
Alju10g1114 697 FunFam TPR repeat-containing thioredoxin TTL4 589 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1114 Alju-ChrAlju10 11151253 11154581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1114 462 607 U-box Gene Family AT3G07370 28.415 2.37e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0813 02 6001693 6004824 Alju10g1114 10 11151253 11154581 CCT
Alju10g1114 10 11151253 11154581 Alju02g0591 02 4310166 4313239 CCT
Alju10g1114 10 11151253 11154581 Alju10g1114 10 11151253 11154581 ECH