Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1108 ATGGATCCCACCAAGAAGCGAAAGCTTGATGATAACGGCGTCGTCACTTCCGATTCCGACTTAAACCTCACTCCTTCCGACGCTCGCAAAATCATTGAGCGCTTCAGCCCCGAGCAGCTCATCGATGTTCTCCAGGAAGCCGTCGTTCGTCACGCTGACGTCCTCGACGCCGTGCGGTCTGTCGCCGACCCTGATGTCACCCAACGCAAGCTGTTTATCCGTGGTCTTGGATGGGAGACCACCACTGACGGCCTCCGCTCCCTGTTTTCCGCCTATGGTGAGCTTGAAGAAGCCATTGTCATTCTTGATAAGGCCACCGGTAAGTCTAAGGGTTATGGATTTGTCACCTTCAAGCACGTTGATGGTGCTTTGCTTGCTCTGAAGGAGCCCAGCAAGAGGATAGATGGTCGCGTTACTGTGACGCAGCTTGCAGCAGCTGGTAATACGGGATCAAATACCAATGCTGCCGACATAGCGATGCGGAAGATATATGTTGCAAATGTGCCGTCTGATCTACCGGCCGATAAATTGTTGGCTCACTTCTCACTTTATGGAGAGATTGAGGAGGGGCCATTAGGGTTTGATAAGCAGACTGGTAAGTCGAAGGGGTTTGCCCTTTTTGTGTACAAGACGCCAGAGGGCGCGCAAGCGGCACTTGTGGATCCAGTGAAGATGGTTGAGGGAAGGCAGCTGAATTGCAAGTTAGCGATAACCGATGGGAAGCAAGGGAAGCGAGGTGGCACGGGGCCAATGGGTCCTGATGGAATGCAAGGTCCAGGGAATGCTCATGGTGATGGAATGGGTTTGGCTCCACCGTCTTCAATGCCAGGGTCACTTTCCGGTCAATACGGCGGCCCTGTCGGCATGGGATCTTATGGGGGTTTTGGGAGTGGGCTTCCTGGTCAACCTCCACTCGGGAATCATCCTCTGAACTCATCTGTGGGTGGAACGGGGTTGTCTTCGGCAGGTAGTCAGGTGCCCTCTTCTCTGGGAGGTACTGGCGGGTATAGTTCTGGGCTAGGTGGTCCTTATGGTGGCTACAGTGGGCCCGGTCCAACTGGTTACGGTGCATTGGGGGGTGGTGGTGGTGCCGGTCTGGGTGGAGGTAGTGGTGGGAATGCCAACAGGTGGCTATCAAGATGGTGGACCTTACGGTTTGTCGTATCCAAATCAACATCACCAACCTACTGGAGCGTCACCTGTACCTAG 1209 0.5443 MDPTKKRKLDDNGVVTSDSDLNLTPSDARKIIERFSPEQLIDVLQEAVVRHADVLDAVRSVADPDVTQRKLFIRGLGWETTTDGLRSLFSAYGELEEAIVILDKATGKSKGYGFVTFKHVDGALLALKEPSKRIDGRVTVTQLAAAGNTGSNTNAADIAMRKIYVANVPSDLPADKLLAHFSLYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALVDPVKMVEGRQLNCKLAITDGKQGKRGGTGPMGPDGMQGPGNAHGDGMGLAPPSSMPGSLSGQYGGPVGMGSYGGFGSGLPGQPPLGNHPLNSSVGGTGLSSAGSQVPSSLGGTGGYSSGLGGPYGGYSGPGPTGYGALGGGGGAGLGGGSGGNANRWLSRWWTLRFVVSKSTSPTYWSVTCT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1108 402 SUPERFAMILY RNA-binding domain, RBD 61 144 IPR035979 GO:0003676
Alju10g1108 402 SMART rrm1_1 70 142 IPR000504 GO:0003723
Alju10g1108 402 SMART rrm1_1 162 234 IPR000504 GO:0003723
Alju10g1108 402 MobiDBLite consensus disorder prediction 306 334 - -
Alju10g1108 402 Gene3D - 45 152 IPR012677 -
Alju10g1108 402 MobiDBLite consensus disorder prediction 239 266 - -
Alju10g1108 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 220 IPR000504 GO:0003723
Alju10g1108 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 138 IPR000504 GO:0003723
Alju10g1108 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Alju10g1108 402 PANTHER GEO13361P1-RELATED 52 347 - -
Alju10g1108 402 FunFam UBP1-associated protein 2C isoform A 52 155 - -
Alju10g1108 402 Gene3D - 153 269 IPR012677 -
Alju10g1108 402 MobiDBLite consensus disorder prediction 294 334 - -
Alju10g1108 402 SUPERFAMILY RNA-binding domain, RBD 154 264 IPR035979 GO:0003676
Alju10g1108 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1108 Alju-ChrAlju10 11093322 11094601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1108 157 336 C2H2 Transcription Factor Family AT2G19380 30.583 9.55e-12 64.7