Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1086 ATGCTCTCTCTGGATCGCCCAAGTATGGGCTTTGATCATATTGAAAGAGTAATGTATGCTTTGACTGTTGGTTTAATCAAACTTCTCATAAAATCAGCACATTTTGACTGCATAGATGAGATGATTGGTTCAGATATGGATCAACAAAGGCATGGGAATTCTAATTCTGAACCTTCTATCCTTGTCAGTAGTGCCAACGTTTTGCAGCCAAATATCCGCACAGTGGCAACAGCTTCAGGGTACACGAGTAATCTTGATGTCTATGACAATGCAGTAATGTATAGAGGGACACAATACAATGCCATTCAGAATCAGCGTAATCTTGATATGGGTGTTGCAGCTGTGACCAACTTGCATTATTCTGGCATGAATCCTTCTTCTAGTACTGGTGTATTGCCTCTCCCTACTAATCACGGAGCCTATGATCAGTTGCCAGCATCAAACAGATTTGCTGTGTCTGGAGTTTCTTCAGATAATTTTGGAAGGAGCAGCAATTACGCTGATGATGTAAGAGCTTCATTCAAAAGAAAAAATGCTGAAACTTTTAGAGGCAATTTCCCACATTTTGATGCGTCAGCTAGTTCTTCAGTTGTTCCCCTAAATGCAAGGCACTCTGATGGGGTTACTATTATGGATACTGCTTCCTTGCCCCCACCTCAATTCCGAGGAAATAGCGTCCCTTCACCCATGGAATTAGGTCCCCCTGGTAGTTTGTGGAGCAGGTCAGGTGAGTCTGTTGCAGTGCATGAACAGAGCCATTTTATTCAAAGTAATTATTTAGGGCAGCCCTTCCACCTAGTTGCTCCTCCTTGGTTGGATCAACAGTTGAATAGAAGTCACAGTGATGGACATACTACAGCTTGGAATCAGTCTCTTCCAATGCTTTATATACAAGCACCCAATGTTAATGGAAGTTCATTAGAGAATGCGAATATGGGTTTGCAGAGATATCATGATGCGGCTAGTAACATAAATGGCCTCAGGTTTGTTCATCCTCCTGTCAACCACCAGCACCATAATTATCATCATCCGGCAATACCAATGAGAGGATTCAGAGGCCACAATATAGTTTTTCAACCTCCAGTAACTGCAGCTTCTTATGGAGTTCCAACAAATCCTTTACACAACGCTATGATCCCGGCGCAGAACGGTTTTGAGATGGGTCATAGGCATGTTGTTGGACTTGTACCATCAGCAGGCCTACAGGTATATCCTCCTCATAGACGATACATGAATGAGACAGCAATTGGGCATCAAAATCTTCACCCTATGGGCTATGTCCAAGTTGATGCAGATGTTGCAATACTGGATGAAGTGGGATTAGTCGACCATCACAGAGATATGCGCTTGGACATAGATAATATGTCCTATGAGGCAAGTTGTGAAAGTCTACTAGATCTTCTTGCATTGGGCGATCAAATTGGCCATGTAAGCACTGGTTTGTCAGAAGAGACCATTTCAGCTGTAATGAAAACTAGAATTCATTCAACATGCACTATTATTAACCTGGAAGAGGAGGAAGAAACTTCGAAGGATGAGGAACCTGAATGCTCAATATGCCTGGAAAAATTTTTGAACAGAGAGAAGATTGGATTTCTTAAATGTGGTCATGAGCATCATGCAGATTGCTTGAAGAAATGGCTTCGTGAGAAAAATATCTGTCCCCTATGCAAATTTGAACCAGGAAAGGACAAAGAAGAATAG 1704 0.4202 MLSLDRPSMGFDHIERVMYALTVGLIKLLIKSAHFDCIDEMIGSDMDQQRHGNSNSEPSILVSSANVLQPNIRTVATASGYTSNLDVYDNAVMYRGTQYNAIQNQRNLDMGVAAVTNLHYSGMNPSSSTGVLPLPTNHGAYDQLPASNRFAVSGVSSDNFGRSSNYADDVRASFKRKNAETFRGNFPHFDASASSSVVPLNARHSDGVTIMDTASLPPPQFRGNSVPSPMELGPPGSLWSRSGESVAVHEQSHFIQSNYLGQPFHLVAPPWLDQQLNRSHSDGHTTAWNQSLPMLYIQAPNVNGSSLENANMGLQRYHDAASNINGLRFVHPPVNHQHHNYHHPAIPMRGFRGHNIVFQPPVTAASYGVPTNPLHNAMIPAQNGFEMGHRHVVGLVPSAGLQVYPPHRRYMNETAIGHQNLHPMGYVQVDADVAILDEVGLVDHHRDMRLDIDNMSYEASCESLLDLLALGDQIGHVSTGLSEETISAVMKTRIHSTCTIINLEEEEETSKDEEPECSICLEKFLNREKIGFLKCGHEHHADCLKKWLREKNICPLCKFEPGKDKEE 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1086 567 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 117 558 IPR045191 GO:0061630
Alju10g1086 567 SMART ring_2 517 557 IPR001841 -
Alju10g1086 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 475 562 IPR013083 -
Alju10g1086 567 ProSiteProfiles Zinc finger RING-type profile. 517 558 IPR001841 -
Alju10g1086 567 Pfam Ring finger domain 516 558 IPR001841 -
Alju10g1086 567 CDD RING-H2_RNF24-like 517 558 - -
Alju10g1086 567 SUPERFAMILY RING/U-box 516 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1086 Alju-ChrAlju10 10816407 10819617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1086 443 560 C3H Transcription Factor Family AT2G15530 49.153 1.39e-29 122