Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1061 ATGGAAGCCAAGATGGAGAGGAAGGGGGCTTTAGTTGAGAAGGTAAGGAAGGACAATAACATAGTTGAAGAAGAAGAAGTAGAGGATGAGATAGAAGAGGAAGAAGAAAACGGTGGTGGAGGCAACGGCGGTGTTGCAGAAGAGCAGAAGAGGAAAGGTGTCATGGGAAGTGGAAGAAGAGGGTCAAGTGGATGCGGCGGAGTTTCTCCACCTTCCTGTCAAGCAGAGAGGTGTGGAGCTGATCTGAATGATGCAAAGAGGTACCATCGCCGCCATAGGGTGTGCGAGTTCCACTCCAAGGCGCCAGTTGTCATGGTTGCAGGGCTAAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGATTTGGGGGAATTTGATGAGGCCAAGAGAAGCTGCCGAAGGCGCTTGGCCGGGCACAACGAACGTCGCCGCAAAAGCACTGGCGAAATTTACAATGAGAGCAGCAGCCGTGGCAAAGGTCACCACACAAAGGAGAGCCATTGCAGGCATGCTGATGATAGAGGAAGAGTTCAAATGAGCGTTCCTGGGAGTTCTGGCTACAACAAATCTTTTCACATAAAATAA 588 0.5051 MEAKMERKGALVEKVRKDNNIVEEEEVEDEIEEEEENGGGGNGGVAEEQKRKGVMGSGRRGSSGCGGVSPPSCQAERCGADLNDAKRYHRRHRVCEFHSKAPVVMVAGLRQRFCQQCSRFHDLGEFDEAKRSCRRRLAGHNERRRKSTGEIYNESSSRGKGHHTKESHCRHADDRGRVQMSVPGSSGYNKSFHIK 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1061 195 Gene3D - 64 134 IPR036893 GO:0003677|GO:0005634
Alju10g1061 195 Pfam SBP domain 73 146 IPR004333 GO:0003677
Alju10g1061 195 MobiDBLite consensus disorder prediction 143 177 - -
Alju10g1061 195 SUPERFAMILY SBT domain 71 151 IPR036893 GO:0003677|GO:0005634
Alju10g1061 195 Coils Coil 17 37 - -
Alju10g1061 195 MobiDBLite consensus disorder prediction 1 22 - -
Alju10g1061 195 FunFam Squamosa promoter-binding-like protein 14 65 134 - -
Alju10g1061 195 ProSiteProfiles Zinc finger SBP-type profile. 70 147 IPR004333 GO:0003677
Alju10g1061 195 MobiDBLite consensus disorder prediction 138 195 - -
Alju10g1061 195 MobiDBLite consensus disorder prediction 23 37 - -
Alju10g1061 195 MobiDBLite consensus disorder prediction 1 70 - -
Alju10g1061 195 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 157 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1061 Alju-ChrAlju10 10526229 10527228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1061 58 158 SBP-box Gene Family AT1G53160 69.608 1.14e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Alju10g1061 SBP 1.6e-31 No_clan