Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1045 ATGGAGGGTTCCTCAGGGTCTGTTTGGCAAAAGTCCAACAATTTTCAGATATTAAACACTTCTGGAGTTTCAGACAGAAACACAGAGCCTATTTATCCAGACAGAAACCCTTATTCTGGTCAGACATCTAATAATTCTTCTGGCTTCAGGAAGGACAAAGAAAGAGTTGTGTTGGCTCAATCTCAAGGTGATCAGCCTAAAAATCTGGCAAGTTTCTCCGGGGTTCGTGAGTACGAGGTTGCGGTTGGCCCTTATGTTCCTTCTGTAAAATGGGGTGATGTTAGCTTGAGGCAGTGGTTAGATAAACCTGAACGCTTGGTAGATGTATTTGAATGCTTGCACATATTTAGGCAAATAGTAGAAATTGTTAACACAGCACATTCTCAAGGAATTGTTGTTCACAATATGAGGCCCTCATACTTTGTCATGTCATCTTTCAATCATATTTCCTTCATTGAGTCTGAATCTTGTTCAGGTTCTGGTTCAGATTCTTTAGAAAATGGATTAAACAGCCTAGGTACTCAGATTGAAAAAAACCCTGCATTTTTCTGTTCCCTTGATATACGTCACCAGAGAAGTTCAGATTCTCGTTGCATGCTGGCCAATGCAGTGTATGCAGCTCGCGCCTCTTTAATTGAAGATACGGACGAAAACAAAGTCAGAGACAGGATGAACACTGAAGAAATAGAAGGAAAGAAGCAATCATTTCCAATGAAACAGTTACTGTTAATGGAGACTAGTTGGTATACTAGTCCTGAAGAGGTGGCTGGTACTTCAAGTTCCTGTGCTTCAGACATCTACCGGCTAGGGGTTCTTCTGTTTGAGCTATTCTGTCCATTCAGCTCAAAAGAAGAAAAGAGCAGAACAATGTCCAGCCTTAGACATAGAGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCCAAAGAGGCTTCCTTCTGCTTATGGTTGCTTCACCCTGAACCCAGTAGTCGTCCAACACTAGGAGAGTTGTTGCATAGTGAGTTCCTTAATGAACAGAGAGATGATATGGAAGAACGTGAAGCAGCAATAGAACTTGGAGAAAAAATAGAGGAACAAGAGTTGTTACTAGAATTCCTTTTGTTAATTCAGCAGAGAAAAAAGGGTGTTGCTGATCATTTGCAGCATACTGTTTCTTTTGTGTGGTCCGATATTGAAGAAGCTACCAAGCAGCAAATAGTATCTAAAGAAGTTGTTGACAGTGAAGATTCTTCTTGCCTAGGGACTAGAAAGCATATCAGATCAGAAATGTATCCTTGCAACATTAAAAAATGCAATGATCAAAACAATTGTGGAGGTGTTTTTTCAAATAAATCTCAGCTAATGAAGAACTTCAAGAAACTAGAGTCAGAATACTTTTTAATGCGATGTAACTCATCGATGAAACCAATGGCTACTGATGGCAAAGGCTCCATTATGATGACTGAAAGAGGTTTTGTCAATAACTTTGCCTCAAAAGACCAATGCAGAGAGGAAAGAATAATTGCTAGGAAGAATTCTTTCCTAGAGGGTTTGTGCAAGTACCTATCTTTCAGTAAGCTAAAGGTTAAGGCTGACCTGACACAAGGTGATCTGTTGCAATCTTCGAACCTAGTATGTGCACTCAGTTTCAATCGTGGAGAGGCATTTTTTGCTACCGCTGGCGTGAGTAAAAAAATTAAAGTTTTTGATTATGAGTCAATCATAAACGAGGATCGTGATATCAGCTATCCAGTAGTGGAGATGGCTAGCAGGTCAAAGTTGAGCAGCATATGTTGGAACACTTACATCAAAAGCCAAATAGCTTCTAGTAACTTCGAAGGTGTAGTACAGTTATGGGATGTGACAAGAAGTCAACCACTATCTGACATGGTGGAGCATGAGCGGCGGGTATGGTCCATCGATTTCTCATCAGCAGACCCGAAAATGTTGGCAAGCGGGAGCGATGACTGTTCTGTCAAACTATGGAGTATCAATCAGGGAATTAGTGTTGGTACCATCAAAACAAAGGCTAATGTATGCAGTGTTCAGTTTCCCCCAGATTCAGGTCGTTTTGTTGCGTTTGGTTCAGCAGATCATCGAATATATTACTATGATCTGAGGAACTTAAAAACGCCTCTTTTTACATTTTCTGGACATGATAAGACTGTGAGTTACATCAAATTTGTGGACAGTGTGAACCTTGTCTCTGCATCCACAGACAACACTTTGAAGCTTTGGGATTTTTCTGCATGCACATCTCAAGTCATAGACACCCCACTTCAAACATTCACAGGTCACATGAATGAAAAGAACTTTGTGGGATTGTCAGTATCTGATGAATTCATTGCCACTGGTTCAGAGACAAATGAGGTGTTCATATACCACAAGGCTTTTCCCATGCCAGCAATGTCTTTCAAGTTTCAGAACACAGACCCATTTTCTGGGAAACAAGTGCATGATTCTGCACAGTTCATCTCTTCTGTTTGCTGGCGCAGTCAGTCAAACACCTTAGTAGCTGCAAATTCCACTGGGAATCTCAAAATTCTGGAGATGGTTTGA 2538 0.4074 MEGSSGSVWQKSNNFQILNTSGVSDRNTEPIYPDRNPYSGQTSNNSSGFRKDKERVVLAQSQGDQPKNLASFSGVREYEVAVGPYVPSVKWGDVSLRQWLDKPERLVDVFECLHIFRQIVEIVNTAHSQGIVVHNMRPSYFVMSSFNHISFIESESCSGSGSDSLENGLNSLGTQIEKNPAFFCSLDIRHQRSSDSRCMLANAVYAARASLIEDTDENKVRDRMNTEEIEGKKQSFPMKQLLLMETSWYTSPEEVAGTSSSCASDIYRLGVLLFELFCPFSSKEEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPEPSSRPTLGELLHSEFLNEQRDDMEEREAAIELGEKIEEQELLLEFLLLIQQRKKGVADHLQHTVSFVWSDIEEATKQQIVSKEVVDSEDSSCLGTRKHIRSEMYPCNIKKCNDQNNCGGVFSNKSQLMKNFKKLESEYFLMRCNSSMKPMATDGKGSIMMTERGFVNNFASKDQCREERIIARKNSFLEGLCKYLSFSKLKVKADLTQGDLLQSSNLVCALSFNRGEAFFATAGVSKKIKVFDYESIINEDRDISYPVVEMASRSKLSSICWNTYIKSQIASSNFEGVVQLWDVTRSQPLSDMVEHERRVWSIDFSSADPKMLASGSDDCSVKLWSINQGISVGTIKTKANVCSVQFPPDSGRFVAFGSADHRIYYYDLRNLKTPLFTFSGHDKTVSYIKFVDSVNLVSASTDNTLKLWDFSACTSQVIDTPLQTFTGHMNEKNFVGLSVSDEFIATGSETNEVFIYHKAFPMPAMSFKFQNTDPFSGKQVHDSAQFISSVCWRSQSNTLVAANSTGNLKILEMV 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1045 845 PRINTS G protein beta WD-40 repeat signature 600 614 IPR020472 -
Alju10g1045 845 PRINTS G protein beta WD-40 repeat signature 643 657 IPR020472 -
Alju10g1045 845 PRINTS G protein beta WD-40 repeat signature 727 741 IPR020472 -
Alju10g1045 845 ProSiteProfiles Trp-Asp (WD) repeats profile. 709 742 IPR001680 GO:0005515
Alju10g1045 845 Gene3D Transferase(Phosphotransferase) domain 1 93 348 - -
Alju10g1045 845 ProSiteProfiles Trp-Asp (WD) repeats profile. 623 665 IPR001680 GO:0005515
Alju10g1045 845 SUPERFAMILY WD40 repeat-like 533 842 IPR036322 GO:0005515
Alju10g1045 845 Gene3D - 508 845 IPR015943 GO:0005515
Alju10g1045 845 Pfam WD domain, G-beta repeat 704 740 IPR001680 GO:0005515
Alju10g1045 845 Pfam WD domain, G-beta repeat 620 656 IPR001680 GO:0005515
Alju10g1045 845 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 506 845 - -
Alju10g1045 845 PANTHER PROTEIN SPA1-RELATED 2 60 845 IPR044630 GO:0009640
Alju10g1045 845 SMART WD40_4 702 740 IPR001680 GO:0005515
Alju10g1045 845 SMART WD40_4 574 613 IPR001680 GO:0005515
Alju10g1045 845 SMART WD40_4 616 656 IPR001680 GO:0005515
Alju10g1045 845 SMART WD40_4 528 563 IPR001680 GO:0005515
Alju10g1045 845 SMART WD40_4 749 788 IPR001680 GO:0005515
Alju10g1045 845 SMART WD40_4 659 698 IPR001680 GO:0005515
Alju10g1045 845 SMART WD40_4 807 843 IPR001680 GO:0005515
Alju10g1045 845 SMART serkin_6 2 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju10g1045 845 ProSitePatterns Trp-Asp (WD) repeats signature. 727 741 IPR019775 -
Alju10g1045 845 ProSiteProfiles Protein kinase domain profile. 1 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju10g1045 845 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 623 660 - -
Alju10g1045 845 MobiDBLite consensus disorder prediction 19 52 - -
Alju10g1045 845 SUPERFAMILY Protein kinase-like (PK-like) 93 345 IPR011009 -
Alju10g1045 845 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 709 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1045 Alju-ChrAlju10 10257909 10262937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1045 609 784 Miscellaneous Gene Families AT5G08390 27.528 1.04e-12 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Alju10g1045 WD40 0.0012 CL0186