Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1044 ATGATGGGTTGCGTTTGTTGCAAGCCCTCTGCCATTGATGACAGTAGGGAGAGTCCAAGGGAGCGATTATCGAATAAGGCTTCATTGGACTCTCGTGGATCTAGGGCTACCTCATCGAGGAGGGAAGATGGATATCGAGTGAAGGATAGATATGATAATAATAATGATGGTAGAATTGCATCCATGGATAAACAAGGAAATGGCTCTGTTCGTTTACAAGTTGATAATTATGAAAGGAAGAGAGAGAAAACAGAGTATGTCGTTGCACAGCATCCAGGAGTTGGTAGTGTTCCAAAAGCCATAGAAGGGGAGCAGGTTGCAGCTGGGTGGCCTTCATGGCTGGCAGCAGTGGCTGGAGAGGCTATCAAGGGATGGTTGCCACGACGAGCAGATTCTTTTGAGAAGTTGGATAAAATTGGTCAGGGAACTTATAGCAATGTTTATAGGGCTCGTGATCTTGAACATAAGAAAATTGTTGCTTTGAAAAAAGTGAGGTTCGATAATCTTGAACCTGAGAGTGTTCGTTTCATGGCAAGGGAAATTCACATTCTTCGTAGGCTTGATCATCCAAACGTTATAAAACTGGAAGGTCTAGTTACATCAAGGATGTCTTGCAGCCTATACCTTGTTTTTGAGTACATGGAGCATGACTTGGCTGGGCTTGCTTCTCATCCTGGACTAAAGTTTACAGAAGCACAGGTCAAATGCTATATGCTGCAACTTCTACGTGGACTTGATCACTGCCACAGCTGTGGTGTACTGCACCGTGATATTAAGGGATCCAACCTTCTGATTGACAACAATGGAATCTTGAAGATTGCTGACTTTGGTTTGGCAAGCTTTTATAATCCCAATCAAATTCAGCCATTGACTAGCCGAGTTGTCACTCTTTGGTATCGGCCTCCAGAGCTTTTGCTTGGAGCAACTTACTATGGCGCTGCAGTAGATTTATGGAGTACAGGCTGCATACTTGCTGAGCTGTATGCTGGAAAGCCTATAATGCCAGGAAGAACTGAGGTTGAACAGTTGCATAAAATTTTTAAACTTTGTGGCTCACCTTCCGAGGATTATTGGAGGAAATCGAAGCTACCTCATGCAACAATATTTAAGCCCCAACAGCCCTACAGGCGGTGTGTTGCAGAAACATTTAAGGAGTTTCCTTCACCTGCACTAGCACTTATGGAAACCCTTCTATCCATAGATCCTGCTGATCGTGGAACAGCAGCATCTGCTTTGAAGAGTGAGTTCTTCACAACAAAACCCTTACCTTGCGATCCTTCAAGTTTGCCCAAGTATCCTCCTAGCAAGGAATTTGATGCCAAAGCACGGGATGAAGAAGCTAGAAGACAAGGAGCGCTCGGAAGCAAGGGCCATAGACAAGGGACAAGAGAGTCGCGGGCTGTCCCTGCACCTGATGCTAATGCTGAACTGGTCCTATCCATGCAGAAGAGACAAGGTCAACCCAACTCTAAGAGCCGAAGCGAGAAGTTCAACCCTCATCCTGAAGAAGTTGCTTCAGGATTTCCCATTGATCCGCCTAGGCCATCACAGGCTGTGGAAATAGGTATAGATAACCAGGCACAGCAACATAAAAGAGCTTCCCATTCAGGTCCACTTTGTAACCGCACTGCATGGACAAAAGCCGGGAAAAACCCAGATGATGCCCCAAAGATCTCTAATGGGGGTGACTTGTCAGCAATGTCCGGCTTAGTTGCAGCAAGAAGGAGCATGTTATCTGATGATCGCAGGGAAAGGTCCGGATCATCAAACTCAGAGGTTCCAAAACTAATAAGCCGGTTCCCGGGATCCTTGAAGGACGCCTCTGAATCATTGATGCAACATGAACAGAAGCATGCTGGAGCTCCTCCTCCAAAGGAAGAAGCGAGAGGCAGCAACAAAGACCCAATTCCTGTTGGTTATGGATCAAAGGGTCATAAAATTCATTATTCTGGTCCTTTGTTAGTTCCATCTAGCAACACAGATCAGATGTTGAAGGACCACGATCGCCAAATTCAAGAAGTCGTCCGAAGAGCACGATTGGACAAGGCGAAGATGAGGAGACTTCAGGCTGAAGGGAACAACCAGATAACCACCAATTCGTTATTTGTTTCTGGTCGCTGA 2121 0.4573 MMGCVCCKPSAIDDSRESPRERLSNKASLDSRGSRATSSRREDGYRVKDRYDNNNDGRIASMDKQGNGSVRLQVDNYERKREKTEYVVAQHPGVGSVPKAIEGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEHKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMLQLLRGLDHCHSCGVLHRDIKGSNLLIDNNGILKIADFGLASFYNPNQIQPLTSRVVTLWYRPPELLLGATYYGAAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKEFPSPALALMETLLSIDPADRGTAASALKSEFFTTKPLPCDPSSLPKYPPSKEFDAKARDEEARRQGALGSKGHRQGTRESRAVPAPDANAELVLSMQKRQGQPNSKSRSEKFNPHPEEVASGFPIDPPRPSQAVEIGIDNQAQQHKRASHSGPLCNRTAWTKAGKNPDDAPKISNGGDLSAMSGLVAARRSMLSDDRRERSGSSNSEVPKLISRFPGSLKDASESLMQHEQKHAGAPPPKEEARGSNKDPIPVGYGSKGHKIHYSGPLLVPSSNTDQMLKDHDRQIQEVVRRARLDKAKMRRLQAEGNNQITTNSLFVSGR 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1044 706 SMART serkin_6 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju10g1044 706 FunFam probable serine/threonine-protein kinase At1g54610 120 215 - -
Alju10g1044 706 MobiDBLite consensus disorder prediction 13 28 - -
Alju10g1044 706 ProSiteProfiles Protein kinase domain profile. 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju10g1044 706 PANTHER CELL DIVISION PROTEIN KINASE 131 423 - -
Alju10g1044 706 Gene3D Phosphorylase Kinase; domain 1 120 215 - -
Alju10g1044 706 MobiDBLite consensus disorder prediction 10 68 - -
Alju10g1044 706 FunFam probable serine/threonine-protein kinase At1g54610 216 457 - -
Alju10g1044 706 Coils Coil 671 691 - -
Alju10g1044 706 MobiDBLite consensus disorder prediction 423 644 - -
Alju10g1044 706 MobiDBLite consensus disorder prediction 480 494 - -
Alju10g1044 706 Pfam Protein kinase domain 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju10g1044 706 MobiDBLite consensus disorder prediction 436 465 - -
Alju10g1044 706 SUPERFAMILY Protein kinase-like (PK-like) 127 425 IPR011009 -
Alju10g1044 706 MobiDBLite consensus disorder prediction 521 541 - -
Alju10g1044 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Alju10g1044 706 MobiDBLite consensus disorder prediction 35 57 - -
Alju10g1044 706 Gene3D Transferase(Phosphotransferase) domain 1 216 455 - -
Alju10g1044 706 CDD STKc_CDK9_like 133 417 - -
Alju10g1044 706 ProSitePatterns Protein kinases ATP-binding region signature. 139 162 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1044 Alju-ChrAlju10 10248344 10253496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1044 125 449 Core Cell Cycle Gene Families AT5G10270 54.545 1.60e-119 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Alju10g1044 Pkinase 6.3e-69 CL0016