Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1018 ATGAGCAGAGCCGGGGACGAAGAAGAGGAAGACGAGTGCTTCTACGAGTCCCACGACCGCCTAGTTTCCTCATCTTGTTCTTGTTCCACTTCTAACTCCGACGACGATAACGACTCCAATTCCAACTCTCCCAATTATGGTTCCAACCAGCCCTTCCCTGTCCCCAAATTCCCAGTCGCCATGTCTAAGTTTGATATATGGATGTCCGAACCCTCCTCGGTGTTGGAACGCCGGACCCGTCTTCTCCGTGAGATGGGCCTCAGCGGTGACCCATCATTGTCCCGGGGAAAGCCTGCCTCCGCCGCTGATCTTAGAGAAATGGACAATGGAGAGTTTGAGCGATCGGCTTCGTCCGATCACTTGAGCCGTCAACAGGCTGTTAGTTCCAGCAGTTCCACCGGCATGTTCCGATCGAAATCAGACGGAGCAGCGGATTGCAGTGACTCGTTTGTGTCTGGTCAGTCTCATGATCGTTGTAATAAGTCTTCTTTTTGTTCGTCTTCTTCAATTTTTTCTATTCATTCGGTCGCGCCAGAGACCGGTTCATTTGTAAATAACCGTAATCTCGTCGTTAAGTCAAGGGGAGTCAATGGTAATGGATCACCAGTTGCTAGTGCCGCTTCCCTTAATAAGCCGCCTTCTGGGAAAAATTGTAAAAGGGTGGATGAAATTCAGAGCGAATCTTCGAACTTGAGTGTGGATTTCGGTCATAGTTTGGTCGTGTCCGTTTCTGAAATTGCAGGTGGGGAGCTAGAGGAGGTTGTGGACAGTATTGGGGTTGACAGCGTAAACGAACAAGTGTGTACCATAAGAGATCTCAATAATGGGAAGGAGTTTGTAGTCAAGGAGGTTAGGGAAGACGGAACGTGGAGCAAACTCAAAGAAGTGGGGACTGGAAGGCAGTTGACTATGGAGGAGTTTGAGATGACGGTTGGGCACTCTCCAATAGTTCAAGAATTAATGAGACGGCAAAATGTTGAGGAGGGAAATAAGGATAATGTAGATTCTAATGCAAGTGGGGGCAGTGGAGGGGGTTCCAAGCCAAAGAAGAAGGTGGGTTGGTTTAAGAGTATCAAGAGTGTTGCGAGCACTATGGCGGGTTATAAAGAGAGACGAAGTAGTGATGAAAGAGATACCTCATCTGAGAAGGGTGGCCGCAGGTCAAGCTCAGCAACCGATGATAGCCAGGATGGTTCATTTCACGGGCCTGAGAGAGTACGGGTTAGGCAGTATGGGAAGTCTTGTAAAGAGCTTACAGGACTTTATAAAAGCCAGGAAATACAGGCTCATAATGGATCTATATGGAGCATTAAGTTTAGTTTGGATGGAAAATATCTTGCCAGTGCAGGTGAGGATTGTGTAATACATGTTTGGCAAGTTGTAGAGTCAGAGAGGAAGGGAGAGCTACTGATGGAGAAAGCAGAAGATGGGAACATGAACATGTTGTTTGTTGTGAATGGGTCTCCGGAGCCGACTCTTCTCTCCCCCGCATGGGACAATCATCCAGACAAGAAGAGAAGGGGGAGGTCATCCATAAGCAGAAAATCTTTGAGCTTGGACCAATTAATGGTGCCAGAAACTATTTTTGCTCTCACAGAAAAACCCATTTGCTCATTCCAAGGCCATCATAATGATGTCCTTGATCTATCTTGGTCCAAGTCTCAGCATTTGCTCTCATCTTCTATGGACAAAACAGTGCGGCTTTGGCACTTGACCAGCCAGACTTGTTTGAAAGTTTTTTCACACAGTGACTTTGTAACCTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCACTGGATTCTAAGGTTCGCATATGGAGCATTCCTGATCATCAAGTTGTTGACTATACTGATCTACATGAGATGGTCACTGCAGCTTGCTATACATCTGATGGGCAGGGTGCATTGGTTGGTTCTTACAAGGGTAGCTGCCATTTATATGATACATCTGACAATAAGTTGCAACAGAAAAGCCAAATCAATTTGCAGAACAAGAAAAAGAAATCGCATCACAAGAAAATCACCGGCTTCCAGTTTGCCCCAGGAAGTTCTTCAGAAGTACTTATCACGTCTGCTGATTCAAGAATTCGGGTTGTTGATGGTGTTGATCTGGTTCATAAGTTCAAAGGATTTCGTAACCCAAATAGCCAGATTTCTGCCTCTCTCACGGCAAATGGTAAATATGTAATCTCAGCAAGTGAGGATTCCCATGTGTATATATGGAAAAACGAAGCTGATTGCAGACCTAACCGGAGCAAAGGCGTCACTGTAACACAATCATGTGAACATTTTCACTGTAAAGATGTTTCAGTGGCGATTCCCTGGCCTGGTATGGGTGACGCTTGGGAAATGCCTGATACTTTCTCTGGAGAACAGACCGCGGATGACAATATTCTGGATGATGTCATGTCCGCCAATCATCCTCCTACCCCGGTGGAGGAAAATTTTGGCACAGATGGTTCACAATCAGCATCCGGATGCACCAACAGTCCTCTTCATGGAACAATTGCAAGCACAACAAATGATTACTTCTTTGATAGAATTTCCGCGACATGGCCGGAAGAAAAACTTGTAGTGCCTGCACGGAACCGAACCCCTCGAGTCAGTATAGATCTCTCCAATGGGGTATGCCAAAACATGTCGGCGTGGGGTATGGTGATTGTAACTGCTGGCCTTCGAGGGGAAATAAGAACTTTCCAAAATTTTGGATTGCCACTTCGGATATAA 2742 0.4595 MSRAGDEEEEDECFYESHDRLVSSSCSCSTSNSDDDNDSNSNSPNYGSNQPFPVPKFPVAMSKFDIWMSEPSSVLERRTRLLREMGLSGDPSLSRGKPASAADLREMDNGEFERSASSDHLSRQQAVSSSSSTGMFRSKSDGAADCSDSFVSGQSHDRCNKSSFCSSSSIFSIHSVAPETGSFVNNRNLVVKSRGVNGNGSPVASAASLNKPPSGKNCKRVDEIQSESSNLSVDFGHSLVVSVSEIAGGELEEVVDSIGVDSVNEQVCTIRDLNNGKEFVVKEVREDGTWSKLKEVGTGRQLTMEEFEMTVGHSPIVQELMRRQNVEEGNKDNVDSNASGGSGGGSKPKKKVGWFKSIKSVASTMAGYKERRSSDERDTSSEKGGRRSSSATDDSQDGSFHGPERVRVRQYGKSCKELTGLYKSQEIQAHNGSIWSIKFSLDGKYLASAGEDCVIHVWQVVESERKGELLMEKAEDGNMNMLFVVNGSPEPTLLSPAWDNHPDKKRRGRSSISRKSLSLDQLMVPETIFALTEKPICSFQGHHNDVLDLSWSKSQHLLSSSMDKTVRLWHLTSQTCLKVFSHSDFVTCIQFNPVDDRYFISGSLDSKVRIWSIPDHQVVDYTDLHEMVTAACYTSDGQGALVGSYKGSCHLYDTSDNKLQQKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNPNSQISASLTANGKYVISASEDSHVYIWKNEADCRPNRSKGVTVTQSCEHFHCKDVSVAIPWPGMGDAWEMPDTFSGEQTADDNILDDVMSANHPPTPVEENFGTDGSQSASGCTNSPLHGTIASTTNDYFFDRISATWPEEKLVVPARNRTPRVSIDLSNGVCQNMSAWGMVIVTAGLRGEIRTFQNFGLPLRI 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1018 913 MobiDBLite consensus disorder prediction 196 216 - -
Alju10g1018 913 Pfam WD domain, G-beta repeat 709 747 IPR001680 GO:0005515
Alju10g1018 913 Pfam WD domain, G-beta repeat 534 569 IPR001680 GO:0005515
Alju10g1018 913 Pfam WD domain, G-beta repeat 575 612 IPR001680 GO:0005515
Alju10g1018 913 Pfam WD domain, G-beta repeat 426 458 IPR001680 GO:0005515
Alju10g1018 913 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 539 573 - -
Alju10g1018 913 ProSiteProfiles Trp-Asp (WD) repeats profile. 539 579 IPR001680 GO:0005515
Alju10g1018 913 PANTHER WD REPEAT DOMAIN 44 6 910 IPR040324 -
Alju10g1018 913 PRINTS G protein beta WD-40 repeat signature 446 460 IPR020472 -
Alju10g1018 913 PRINTS G protein beta WD-40 repeat signature 557 571 IPR020472 -
Alju10g1018 913 PRINTS G protein beta WD-40 repeat signature 599 613 IPR020472 -
Alju10g1018 913 MobiDBLite consensus disorder prediction 1 54 - -
Alju10g1018 913 Gene3D - 398 492 IPR015943 GO:0005515
Alju10g1018 913 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 579 613 - -
Alju10g1018 913 MobiDBLite consensus disorder prediction 20 50 - -
Alju10g1018 913 Gene3D - 516 774 IPR015943 GO:0005515
Alju10g1018 913 SUPERFAMILY WD40 repeat-like 421 750 IPR036322 GO:0005515
Alju10g1018 913 ProSiteProfiles Trp-Asp (WD) repeats profile. 579 621 IPR001680 GO:0005515
Alju10g1018 913 FunFam Transducin/WD40 repeat-like superfamily protein 385 488 - -
Alju10g1018 913 MobiDBLite consensus disorder prediction 196 212 - -
Alju10g1018 913 MobiDBLite consensus disorder prediction 110 138 - -
Alju10g1018 913 FunFam WD repeat-containing protein 44 520 786 - -
Alju10g1018 913 MobiDBLite consensus disorder prediction 328 351 - -
Alju10g1018 913 MobiDBLite consensus disorder prediction 369 390 - -
Alju10g1018 913 ProSiteProfiles Trp-Asp (WD) repeats profile. 427 468 IPR001680 GO:0005515
Alju10g1018 913 MobiDBLite consensus disorder prediction 119 138 - -
Alju10g1018 913 SMART WD40_4 532 570 IPR001680 GO:0005515
Alju10g1018 913 SMART WD40_4 420 459 IPR001680 GO:0005515
Alju10g1018 913 SMART WD40_4 614 653 IPR001680 GO:0005515
Alju10g1018 913 SMART WD40_4 573 612 IPR001680 GO:0005515
Alju10g1018 913 SMART WD40_4 706 747 IPR001680 GO:0005515
Alju10g1018 913 SMART WD40_4 660 705 IPR001680 GO:0005515
Alju10g1018 913 MobiDBLite consensus disorder prediction 366 407 - -
Alju10g1018 913 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 427 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1018 Alju-ChrAlju10 9987283 9992607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g1018 526 744 U-box Gene Family AT1G04510 27.500 1.13e-06 50.4