Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0881 ATGATTGAAGCGATCTGTTTGGTTCCCAGGAAAAGAAGCGACGCCGGCGATCCCGAACTTCCCGGGGACCTTGGCACCAGAATGGTTTCCCCGGAAAATTCCAATTGGTTTTTCGATTATGGCCTGATTGATGACATATCCGTCCCTGATGGGAACTTCACTGTCCATGCCTCCGGGTTCACCTGGCCGGCGCAGGCCTTGAATGGTTCTTCAAATGTCTGCATGGAAATTGATGGCTTATCGGGGGATTCTGATGTTCTCAAAGAGTCTGGTTCAAAGAAGAGGAGCAGATCTGATTCGTGTACTGCTTCCAGCTCCAAGGCATGTCGTGAGAAATTGCGGAGGGATAGGTTGAATGACAAGTTTCTTGAATTAGGCTCCACTTTGGAGCCTGGAAAGCCTCCCAAAACAGACAAAGCTGCCATTTTGATCGATGCTGCGCGAATGGTGACACAACTACGGGGTGAAGCCCAGAAGTTGAAGGATTCAAATGCCAGTCTTCAAGAGAAGATAAAAGAGTTGAAGGCTGAGAAGAATGAACTTCGTGACGAGAAACAAAGGCTCAAGGGAGAGAAAGAAAAGTTGGAGCAGCAACTGAAAACTATCAATGTACAGCCTAGTTTCTTGCCTACCCCGCCTGCAATTCCTGCTGCATATGCGGCGGCACAAGGCCAAGCCCCCGGCAACAAGCTGGTTCCATTTATTAGTTATCCAGGAGTCGCCATGTGGCAATTTATGCCACCAGCTGCAGTGGATACTTCACAGGATCATGTACTCCGTCCACCAGTTGCCTAA 795 0.4906 MIEAICLVPRKRSDAGDPELPGDLGTRMVSPENSNWFFDYGLIDDISVPDGNFTVHASGFTWPAQALNGSSNVCMEIDGLSGDSDVLKESGSKKRSRSDSCTASSSKACREKLRRDRLNDKFLELGSTLEPGKPPKTDKAAILIDAARMVTQLRGEAQKLKDSNASLQEKIKELKAEKNELRDEKQRLKGEKEKLEQQLKTINVQPSFLPTPPAIPAAYAAAQGQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0881 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 173 IPR036638 GO:0046983
Alju10g0881 264 CDD bHLH_AtILR3_like 107 182 - -
Alju10g0881 264 Coils Coil 150 205 - -
Alju10g0881 264 Pfam Helix-loop-helix DNA-binding domain 106 153 IPR011598 GO:0046983
Alju10g0881 264 FunFam Transcription factor bHLH34 93 151 - -
Alju10g0881 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 102 153 IPR011598 GO:0046983
Alju10g0881 264 PANTHER BHLH TRANSCRIPTION FACTOR 30 264 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Alju10g0881 264 MobiDBLite consensus disorder prediction 85 108 - -
Alju10g0881 264 SMART finulus 108 159 IPR011598 GO:0046983
Alju10g0881 264 Gene3D - 103 179 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0881 Alju-ChrAlju10 8074079 8076705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0881 28 264 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 72.803 1.66e-121 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju10g0881 HLH 8.1e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju10g0881 10 8074079 8076705 Alju10g0881 10 8074079 8076705 ECH