Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0853 ATGGCGGCGATGAGAGCGGCAGTGGCGGCGCCTCGCGGTCTAAGGCGGCTATTCTCAACCACTACGACTTCAACCTTCATGGCTCCTCCTCCTCCGACCTCGCCGGGGGCTCCTGGTCGAGAGATGGCGGAGCCCAGTCCCAATCTCTTCGTCTCTGGGCTTAGCAAACGGACTACTACGGAAAAGCTGCGGGAGGCATTTTCCCACTTTGGTGAAGTTGTTAATGCTAGAGTGGTAACTGACAGAGTATCAGGTTATTCTAAGGGGTTTGGCTTTGTAAGATATGCCACTGTAGAAGAAGCTGCAAAAGGCATTGAGGGCATGGATGGAAAGTTTCTGGATGGTTGGGTTATATTTGCGGAGTATGCGAAACCAAGACCACCACCAGGACAACCTATGCCTCCTCCGTATGGCCAGCATTAA 423 0.5296 MAAMRAAVAAPRGLRRLFSTTTTSTFMAPPPPTSPGAPGREMAEPSPNLFVSGLSKRTTTEKLREAFSHFGEVVNARVVTDRVSGYSKGFGFVRYATVEEAAKGIEGMDGKFLDGWVIFAEYAKPRPPPGQPMPPPYGQH 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0853 140 SMART rrm1_1 48 121 IPR000504 GO:0003723
Alju10g0853 140 SUPERFAMILY RNA-binding domain, RBD 25 138 IPR035979 GO:0003676
Alju10g0853 140 Gene3D - 24 131 IPR012677 -
Alju10g0853 140 FunFam RNA recognition motif-containing protein 24 135 - -
Alju10g0853 140 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 115 IPR000504 GO:0003723
Alju10g0853 140 MobiDBLite consensus disorder prediction 23 47 - -
Alju10g0853 140 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Alju10g0853 140 PANTHER NUCLEOLAR PROTEIN 8 28 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0853 Alju-ChrAlju10 7663179 7666057 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0853 48 126 Eukaryotic Initiation Factors Gene Family AT2G23350 37.975 1.47e-11 58.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju10g0853 10 7663179 7666057 Alju10g0853 10 7663179 7666057 ECH