Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0762 ATGGCTTCGTTGTTCAAGGATTTAACCAAGCTTTCAGCCTATCGTGATAGAAAATTTCCGGGAACACAAGAGGAATTTGAGCATGCGCTCCTGACTTCGGCTACTGTTTATGTGGGAAATATGTCATTTTACACAACAGAAGAGCAAGTTTATGAACTTTTTTCTCGAGCTGGAGAAATTAAGAAAATTATCATGGGATTGGATAAAAACTCAAAAACTCCCTGTGGCTTTTGTTTTGTTTTATACTACTCTCGAGAAGACACTGAAGATGCTGTCAAATACATAAGTGGGACAATACTTGATGATCGTCCTATTCGTGTAGATTTTGACTGGGGATTCCAGGACGGAAGACAATGGGGTCGTGGTCGTAGTGGTGGTCAGGTGCGTGATGAATATCGGACTGATTATGATCCTGATATCCTTTTAGATGTTAAATTTTTGTTGAATTGCAAATTTGTTGCCTATGATGAAAGTGACATTGTTCAGAAAGAGTTGGAGGCACAAAGGCAGCTCGTTGATTATGGTGCTGGTTCTTTGGGCTCTTTTCCACCAGTTTTGCCACCATCCTATGGCAGACATGGTGGTTCTCATCGGTATGGTAGAGATTATCAAAGGAAGAGACACAGAGATGACGATCGCCATGCCTACGAGTCCTCAAAAAGATCATCAGATCATGAATCTCGGAGGAACTCTGATCATGACTCTAGACCGGAAAAGAATCCACGATTTCGTGAGAGTGGTGATTCTGATGATGACGAGGAAGATGATCGAAAAAGAAGATCTTAG 786 0.4148 MASLFKDLTKLSAYRDRKFPGTQEEFEHALLTSATVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILLDVKFLLNCKFVAYDESDIVQKELEAQRQLVDYGAGSLGSFPPVLPPSYGRHGGSHRYGRDYQRKRHRDDDRHAYESSKRSSDHESRRNSDHDSRPEKNPRFRESGDSDDDEEDDRKRRS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0762 261 FunFam Nuclear cap-binding protein subunit 2 4 141 - -
Alju10g0762 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Alju10g0762 261 CDD RRM_NCBP2 36 113 IPR034148 -
Alju10g0762 261 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 139 IPR027157 GO:0000339|GO:0005846|GO:0045292
Alju10g0762 261 MobiDBLite consensus disorder prediction 204 261 - -
Alju10g0762 261 MobiDBLite consensus disorder prediction 182 261 - -
Alju10g0762 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Alju10g0762 261 SMART rrm1_1 35 108 IPR000504 GO:0003723
Alju10g0762 261 Gene3D - 6 140 IPR012677 -
Alju10g0762 261 SUPERFAMILY RNA-binding domain, RBD 30 137 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0762 Alju-ChrAlju10 6549170 6553088 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0762 35 109 Eukaryotic Initiation Factors Gene Family AT3G11400 32.000 2.45e-06 46.2