Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0758 ATGATCACTTCTGAATGCACAGAACACAAGTTCTTTGATGAAACCCACCACCTTCTCTTCCCAAACAAATCAATTATCAGAGAAATTGACAACTACATGCCACCCAGGAAACTCCTCACTCGCCTTGGCGCCGCCAAAACCACTCTCCACGACGTCGCCGCCGATATGTTCACGGACTCGCCTCAGTTTACCTCTTCCGACGAGACCCTTCTCCGGAAATTCCTTCCCCACAACAACCTGGAATCGTCCGACGACGATGATTCCGACCCATACTCCTCGGAACACTTCCGAATGTACGAGTTCAAGGTCCGCCGGTGCAATCGCAGCCGGAGCCATGATTGGACTGACTGCCCCTTCGCTCATCCCGGCGAAAAGGCTCGCCGGCGCGATCCCAGAAAGTATCACTATTCCGGCAACATCTGCTCCGAGTATCGCCGCAGCGGCGCATGCAAACGCGGCGATAGTTGTGAGTTTGCACACGGGGTGTTTGAATGTTGGCTTCACCCATCGAGGTACAAGACAGAGGCTTGTAAGGATGGTAAGAATTGTAAGCGAAAGGTATGTTTCTTCGCTCACACACCTCGCCAACTGAGAATTTTGCCAGCGAATAATTGCTCTGCTTCTTCACCTGATCAAATCTCGGACAATAATAAGGCCAAATTCTTAAAATCCTCACTGGGATCAAATAATTGCTGTATGTTTTGTCACCGCTCTCCTAAGGCTAATAATTCTTCACCGACCTCCACCCTCTTCGGGATGTCCCATTTTTCACCACCGTTGTCACCGTCGTCGTCTTCGTCCCCTGTTTCGCCGATCAAAACAGGACACTCTACAAATGGTTTATCTCCAATTTCTCGGTATAATGAAAGAATTAAGGGATCTGAGGTTTATAATAATCAGGGGATGATCATGAGCTACAGGGATGCTCTCACTGAGTTGATGAGCTCCTTGGAGGTTCTGAATTTCAATGAAGCTTTGTCTTCTTCACCTGAAATAATCTCTGCAACTACCACTAATAATCAGTCTCCAAATCTGCACTGGCTTGACGTTTCAACAGCTCTATCTGCTTCAAGGAAATTTTCATCAACTGGAAAATTTTTGAACGAAAGCGGAATGGTTGATGATGATAATAATAATAATGGGTCTTCATCATGTGCAACTGATCCAGATCTGGGTTGGGTCAATGACCTGCTGATATAG 1200 0.47 MITSECTEHKFFDETHHLLFPNKSIIREIDNYMPPRKLLTRLGAAKTTLHDVAADMFTDSPQFTSSDETLLRKFLPHNNLESSDDDDSDPYSSEHFRMYEFKVRRCNRSRSHDWTDCPFAHPGEKARRRDPRKYHYSGNICSEYRRSGACKRGDSCEFAHGVFECWLHPSRYKTEACKDGKNCKRKVCFFAHTPRQLRILPANNCSASSPDQISDNNKAKFLKSSLGSNNCCMFCHRSPKANNSSPTSTLFGMSHFSPPLSPSSSSSPVSPIKTGHSTNGLSPISRYNERIKGSEVYNNQGMIMSYRDALTELMSSLEVLNFNEALSSSPEIISATTTNNQSPNLHWLDVSTALSASRKFSSTGKFLNESGMVDDDNNNNGSSSCATDPDLGWVNDLLI 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0758 399 SUPERFAMILY CCCH zinc finger 134 165 IPR036855 GO:0046872
Alju10g0758 399 PANTHER UNKEMPT FAMILY MEMBER 64 398 IPR045234 -
Alju10g0758 399 SMART c3hfinal6 135 162 IPR000571 GO:0046872
Alju10g0758 399 SMART c3hfinal6 171 194 IPR000571 GO:0046872
Alju10g0758 399 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 161 IPR000571 GO:0046872
Alju10g0758 399 Gene3D - 135 199 - -
Alju10g0758 399 ProSiteProfiles Zinc finger C3H1-type profile. 136 163 IPR000571 GO:0046872
Alju10g0758 399 MobiDBLite consensus disorder prediction 262 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0758 Alju-ChrAlju10 6487835 6489034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0758 85 267 C2H2 Transcription Factor Family AT5G12850 46.739 6.92e-50 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju10g0758 zf-CCCH 1.5e-08 CL0537