Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0720 ATGGCTGCGTTAGATCAGTATTTTGATGAGGCTGTGTACCAAACTGATTCCTTTGGTGAAGAAAACTCTTATTCAGAAAAGTGGGAATCTGGTGCAGATTCGGATAGAATTGATTCTAATGGCTTTGACTGCAATATCTGCTTGGACTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCCATTTCCACAACCTTTCCAACGAAGAATACGGAGAGCAGCAGAGTCCACAGTGTCCGGTATGCAAAACCGAAGTTTCCCAATCCTCGCTTGTTCCACTCTACGGCCGAGGCCAAACCACAAAACCTTCTTCCAAAGGCAAGTCCCACCATATGGGGAATATGATCCCACAAAGACCGCATGGACCTTTGTCATCGGTTTATCGTCGAAGACCATTTAATAATGCTACTACTAGTGCAGTTCCTCAACCGTCTTCCCAATTTTATAACGGTCACTATCCTCATTATCATCATCCTCAACAGTTCAACTCAATCCCAAGCAATTCCAACTCAGGAATGCTTGGCATGGATGGTGCACTAAGAAACGCATTCGACTCAAGAATTGGCTTGTTTGGTGAGATGATATACGCGAGAGTGTTTGGGAACCAAGTGACAAACGTATACGCCTACCCGGATACGTATAATCTCGCTTGGAACAGTAATCCAAGGATCAGAAGGCACTTGTTGCAAACTGATAAGCAACTGAATAGAATCTGTTTTTTCCTGCTTTGTTCTATAGTTTTGTGTCTTCTCTTATTCTGA 795 0.4377 MAALDQYFDEAVYQTDSFGEENSYSEKWESGADSDRIDSNGFDCNICLDCVQDPVVTLCGHLYCWPCIYKWLHFHNLSNEEYGEQQSPQCPVCKTEVSQSSLVPLYGRGQTTKPSSKGKSHHMGNMIPQRPHGPLSSVYRRRPFNNATTSAVPQPSSQFYNGHYPHYHHPQQFNSIPSNSNSGMLGMDGALRNAFDSRIGLFGEMIYARVFGNQVTNVYAYPDTYNLAWNSNPRIRRHLLQTDKQLNRICFFLLCSIVLCLLLF 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0720 264 ProSiteProfiles Zinc finger RING-type profile. 44 94 IPR001841 -
Alju10g0720 264 MobiDBLite consensus disorder prediction 105 135 - -
Alju10g0720 264 MobiDBLite consensus disorder prediction 105 119 - -
Alju10g0720 264 Pfam Zinc finger, C3HC4 type (RING finger) 44 93 IPR018957 GO:0046872
Alju10g0720 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 128 IPR013083 -
Alju10g0720 264 SUPERFAMILY RING/U-box 32 100 - -
Alju10g0720 264 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 261 IPR045103 GO:0005783|GO:0006511|GO:0061630
Alju10g0720 264 ProSitePatterns Zinc finger RING-type signature. 59 68 IPR017907 -
Alju10g0720 264 SMART ring_2 44 93 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0720 Alju-ChrAlju10 6078750 6079544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0720 33 264 C3H Transcription Factor Family AT4G28270 37.131 4.34e-44 146