Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0713 ATGGGTACTCTTCTTCAATCTACACTATTCTACTTGATTTTGCTACATTCATGGAAGATTTCAGCTAACAAGGACGGAGAATGGAAGTCTGCTACGGCAACATACTCCAAAGACAAAGATGGGTCGCTCATTACAGAAGGAGCCTGTGGTTATGGAGACCTTCACAGGGCTAGCTATGGAAGATATAGTGCTGGGTTGAGCACTATCTTGTTCAACAGAGGAAGTACCTGTGGGGCTTGCTATGAAATCAGATGTGTAAACCACATCTTGTGGTGCTTGATAGGAAGCCCATCTGTGATTCTTACTGCTACAGATTTCTGCCCTCCAAACTATGGACTTTCTGCAGATTATGGTGGCTGGTGCAATTTTCCAAAGGAGCATTTTGAGATGTCAGAAGCAGCATTTTCTGAGATTGCCAAGAGAAAAGCTGATATAGTGCCAATTCAGTATAGAAGAGTGAAGTGTCAAAGAAGTGGTGGTCTGAAATTTACAATGACGGGTAGTTTCCATTTCTACCAAGTCCTGATTACCAATGTAGGGTTGGATGGTGAAGTAGTTGCTGTAAAAGTGAAGGGATCAAGAACAGGGTGGATACCTATGGCAAGGAATTGGGGGCAAAATTGGCATTGCAGTGTTGATCTTCAACGACAGCCTCTGTCTTTTGAGGTGACCATCATTGGTGGAAGAACACTCACATCTTACAATGTTGCCCCTGCAAATTGGCAATTTGGACAGACTTTTGAAGGAAAGCAGTTTCAGCAATAG 765 0.4314 MGTLLQSTLFYLILLHSWKISANKDGEWKSATATYSKDKDGSLITEGACGYGDLHRASYGRYSAGLSTILFNRGSTCGACYEIRCVNHILWCLIGSPSVILTATDFCPPNYGLSADYGGWCNFPKEHFEMSEAAFSEIAKRKADIVPIQYRRVKCQRSGGLKFTMTGSFHFYQVLITNVGLDGEVVAVKVKGSRTGWIPMARNWGQNWHCSVDLQRQPLSFEVTIIGGRTLTSYNVAPANWQFGQTFEGKQFQQ 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0713 254 Gene3D - 14 156 IPR036908 -
Alju10g0713 254 Pfam Expansin C-terminal domain 162 238 IPR007117 -
Alju10g0713 254 SMART dpbb_1 63 150 IPR007112 -
Alju10g0713 254 PANTHER EXPANSIN-A15 18 252 IPR002963 GO:0009664
Alju10g0713 254 Pfam Lytic transglycolase 64 150 IPR009009 -
Alju10g0713 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Alju10g0713 254 Gene3D - 161 252 IPR036749 -
Alju10g0713 254 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Alju10g0713 254 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Alju10g0713 254 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Alju10g0713 254 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Alju10g0713 254 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Alju10g0713 254 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Alju10g0713 254 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Alju10g0713 254 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Alju10g0713 254 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Alju10g0713 254 CDD DPBB_EXPA_N 27 155 - -
Alju10g0713 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 160 IPR007112 -
Alju10g0713 254 SUPERFAMILY Barwin-like endoglucanases 27 178 IPR036908 -
Alju10g0713 254 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Alju10g0713 254 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Alju10g0713 254 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Alju10g0713 254 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Alju10g0713 254 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Alju10g0713 254 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Alju10g0713 254 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0713 Alju-ChrAlju10 6047059 6047993 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0713 1 253 Expansin Gene Family AT4G38210 64.706 9.19e-125 353