LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju10g0710	ATGGATAGATTCACTAATGGAATTGATGACTCGAGCTCCGAGAGGCAACAATGGAAGCCAGTTTATGACGAAGCCTCCAAGCCAATATATCAACCCTTTGTCTCTGTTTCATCGTCTTCTTCAAGTATCAAGTTTCCTTTTGCCCTTGATGGGTCTCCCTACCAATCTGCACCCACAAATCATCAACCCATGAATTCTTTAGCACTTGATTATCATCATCATCATCAGCAGCAGCAGCAGCAGTATCTTCGGCCATTACACACAACAAAGCTATACAGGGGAGTTAGGCAACGCCATTGGGGCAAATGGGTGGGTGAGATTCGTCTTCCCAACAGTAGAAACCGCCTCTGGTTAGGAACATTTGACACTGCAGAAGATGCTGCTATGGCTTATGATCGTGAGGCCTTTAAGCTCAGAGGAAACAATGCTAAGCTCAATTTCCCTCACCTATTTCTCAATAAACCTCCAAATTCAACTGATTCTTCTTTATCCTCAAAGCAGCCTGAACCACAAGAAGAGAATCATGAAGTTCAGGAAACTGGTAGGGGTAATGAAACAGGGGAAGGTGTTGCAGAGGCAGGGGAATTGGTTTCAGGGGACATGGAGGCTTGGTACAAGGCGATTCCACAAGGTTGGGGACCTGAGAGCCCTGTGTGGGATGATTTAGACACCACCAACAATCTTCTGTTTCAGTCATCATCACTGTTTGGTTCTGTGGATCCAAATTACGAGCAAGAGTTTCATGATCTTAATAATAATGCTCAGGGACAAGAAGACAAGACAGGAACAGATTGTAGTTGTTCCGCTTCCTCCTCTGCTTGTCTCATGAAGCCTTTCTTGTGGAAGGATTAA	852	0.4484	MDRFTNGIDDSSSERQQWKPVYDEASKPIYQPFVSVSSSSSSIKFPFALDGSPYQSAPTNHQPMNSLALDYHHHHQQQQQQYLRPLHTTKLYRGVRQRHWGKWVGEIRLPNSRNRLWLGTFDTAEDAAMAYDREAFKLRGNNAKLNFPHLFLNKPPNSTDSSLSSKQPEPQEENHEVQETGRGNETGEGVAEAGELVSGDMEAWYKAIPQGWGPESPVWDDLDTTNNLLFQSSSLFGSVDPNYEQEFHDLNNNAQGQEDKTGTDCSCSASSSACLMKPFLWKD	283

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju10g0710	283	Gene3D	AP2/ERF domain	91	149	IPR036955	GO:0003700\|GO:0006355
	Alju10g0710	283	Pfam	AP2 domain	92	140	IPR001471	GO:0003700\|GO:0006355
	Alju10g0710	283	FunFam	Ethylene-responsive transcription factor 2	90	149	-	-
	Alju10g0710	283	ProSiteProfiles	AP2/ERF domain profile.	91	148	IPR001471	GO:0003700\|GO:0006355
	Alju10g0710	283	SMART	rav1_2	91	154	IPR001471	GO:0003700\|GO:0006355
	Alju10g0710	283	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	20	222	-	-
	Alju10g0710	283	MobiDBLite	consensus disorder prediction	152	168	-	-
	Alju10g0710	283	MobiDBLite	consensus disorder prediction	149	189	-	-
	Alju10g0710	283	CDD	AP2	90	150	IPR001471	GO:0003700\|GO:0006355
	Alju10g0710	283	PRINTS	Ethylene responsive element binding protein signature	114	130	IPR001471	GO:0003700\|GO:0006355
	Alju10g0710	283	PRINTS	Ethylene responsive element binding protein signature	92	103	IPR001471	GO:0003700\|GO:0006355
	Alju10g0710	283	SUPERFAMILY	DNA-binding domain	91	149	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju10g0710	Alju-ChrAlju10	6028993	6029844	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju10g0710	80	223	AP2-EREBP Transcription Factor Family	AT4G28140	57.432	1.38e-48	161

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju10g0710		AP2	8.7e-12	CL0081