Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0592 ATGCGCGTTGTAGGTTCCAAGGAGAAGATTGCAGAACTGAAGAAAAAAGTTTCTCTCTTGAAGAAGAAACCTGCAGATTTTGACCCTAGTTCGATATCTTGTTGGGACAAGGGTGAACATGTGCCCTTTCTGTTTCTCTATTTGGCATTTGATACAATTGCAGAAGAAACAGGACGGAATGTCAGTACAGATATAGTGTGCAATATGCTGAGGACTGTCATGAACACTACACCCGAGGATCTGGTGGCTGTTGTTTATCTTTTGGCAAATAAGATTGATCCTTCACATAAAGTGCTGAAATTGGGAATAGGGGATGCTTCAATTATTAAGGCGCTTGCAGCGACATGAGGGCAACTTTACGCGGGAAATGTGATACTCGGAGTCATGGAGGATGGCGAGGCAGCTCTAGGAGGCCCTGGTGCAGTTGAGATGGTCACTGTCGTAGGGCAAGGAGTCGAGGATGGACTTGATCTTGGATTGAGCGGCCTTAAGGTTGTCGACGGAGATGGCTATGGCGGATTGGATGATGAAGCTGCAAACGTTGTTAAACAGGTGTATTCTGTTCTTCCTGTGTATGGCGAAATAATTCCTGCATTGCTTAGCGGTGGTGTATGGAAACTTCCAGAGACGTGTAACTTTACTCTTGGTGTTCCGGTTGGACCTATGTTGTCTAAAGTAGCTAAGGGAGTATCTGAAGTTCTAAATAAATTCCAGGATGTAGAATTTACTTGTGAATATAAATATGATGGAGAGCGTGCCCAGATACATTATATGGATAGTGGATCAGTTGAGATTTACAGTAGAAATGCTGAACTGAACACTGGAAAGTTTCCTGATGTTGCTGCTGCTATTTCAAGTACTCGAGCTCGGAAAAATGTTTCTATGAGTGATATAAAAGTCGATGTATGCATATTTGCCTTTGATATCTTATATCTTAATGGCAAGCCCCTACTTCAAGAAATCCTAAAAATTCGGAGAGAGCATCTCTATGCCTCTTTCGAGGAAGAACCTGGATTTCTTCAGTTTGCAACAGCAATAACATCAAATGATGTTGAGGAAATACAAAAGTTTCTCGATGCAGCAGTTGATGCTAGTTGTGAGGGTTTAATTATCAAAACTTTATATGAAGACGCTACGTACAAACCTTCCAAGAGGTCACTCAATTGGCTAAAATTGAAGAAAGATTATCTTGACAATATAGGGGACTCGATGGATTGGGTACCTATTGCTGCTTTTCATGGTCGTGGGAAACGCACAGGGGTCTATGGAGCTTTTCTGCTTGCTATGACAGTAGTAATGAAGAATTTCAAAGCATCTCCTTATTATCAATATGCAGAGACAATCAATCCTGATGTATGGTTTGAAGCTTCTGAGGTATGGGAGGGCATATCTCTTCGGTTCCCTCGTCTTGTTCGAGTTCGGGATGACAAAGCTCCTGAACAAGCCTCTTCTTCTGAGATGGTAAAGAAAAATCAATCTTCTAATCAGACTAATTAA 1497 0.4168 MRVVGSKEKIAELKKKVSLLKKKPADFDPSSISCWDKGEHVPFLFLYLAFDTIAEETGRNVSTDIVCNMLRTVMNTTPEDLVAVVYLLANKIDPSHKVLKLGIGDASIIKALAATXGQLYAGNVILGVMEDGEAALGGPGAVEMVTVVGQGVEDGLDLGLSGLKVVDGDGYGGLDDEAANVVKQVYSVLPVYGEIIPALLSGGVWKLPETCNFTLGVPVGPMLSKVAKGVSEVLNKFQDVEFTCEYKYDGERAQIHYMDSGSVEIYSRNAELNTGKFPDVAAAISSTRARKNVSMSDIKVDVCIFAFDILYLNGKPLLQEILKIRREHLYASFEEEPGFLQFATAITSNDVEEIQKFLDAAVDASCEGLIIKTLYEDATYKPSKRSLNWLKLKKDYLDNIGDSMDWVPIAAFHGRGKRTGVYGAFLLAMTVVMKNFKASPYYQYAETINPDVWFEASEVWEGISLRFPRLVRVRDDKAPEQASSSEMVKKNQSSNQTN 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0592 498 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 245 253 IPR016059 GO:0003909
Alju10g0592 498 MobiDBLite consensus disorder prediction 484 498 - -
Alju10g0592 498 ProSiteProfiles ATP-dependent DNA ligase family profile. 295 431 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Alju10g0592 498 Pfam ATP dependent DNA ligase domain 287 393 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Alju10g0592 498 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 183 395 - -
Alju10g0592 498 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 14 117 - -
Alju10g0592 498 SUPERFAMILY Nucleic acid-binding proteins 401 488 IPR012340 -
Alju10g0592 498 Gene3D - 174 220 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Alju10g0592 498 Gene3D - 19 121 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Alju10g0592 498 ProSitePatterns ATP-dependent DNA ligase signature 2. 367 393 IPR016059 GO:0003909
Alju10g0592 498 MobiDBLite consensus disorder prediction 478 498 - -
Alju10g0592 498 Gene3D - 434 494 IPR012340 -
Alju10g0592 498 CDD Adenylation_DNA_ligase_I_Euk 210 396 - -
Alju10g0592 498 Gene3D - 396 433 IPR012340 -
Alju10g0592 498 Gene3D DNA ligase/mRNA capping enzyme 289 395 - -
Alju10g0592 498 Coils Coil 3 23 - -
Alju10g0592 498 Gene3D DNA ligase/mRNA capping enzyme 221 288 - -
Alju10g0592 498 Pfam DNA ligase N terminus 43 117 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Alju10g0592 498 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 24 117 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0592 Alju-ChrAlju10 4902456 4910572 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0592 9 496 Core DNA Replication Machinery Family AT1G08130 50.000 0.0 587