Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0579 ATGCCGGCCGGGATTATGATTCCGGCGAGAAATATGCCCTCCTTGATCGGAAGGAACAACAACGTTGGCGGTGGTTTTGGATCATCCTCAGGTCTTTGTCTTAGTCAGCAGCCAAACATGATGGATGGCCAGCTCCTGCCAGCACTGGACATGGCTCCTAACACATCGGAGAGTGACATCCCGAGAATCCGAGACGACGATTTCGACACCGCCACCAAATCCGGCAGCGAAAATCAGGAAAACGGCGCCTCCGGTGACGACCAAGACCCACGACCCAAGAAGAAACGTTACCACCGCCACACCCAGCACCAGATCCAGGAAATGGAAGCTTTCTTTAAGGAGTGCCCTCACCCCGATGACAAGCAAAGGAAGGAGCTTAGTCGTGAATTAGGGTTAGAGCCATTGCAAATCAAGTTCTGGTTCCAAAACAAGCGCACCCAGATGAAGAACCAACATGAGAGGCATGAGAACTCACACCTAAGAGCCGAAAACGAAAAGCTTCGTGCCGATAACATGAGGTACAGAGAAGCTCTCAGCAATGCATCTTGTCCTAACTGTGGTGGACCGACCGCTATAGGAGAAATGTCCTTCGATGAACATCATTTGAGACTCGAAAATGCCCGCCTAAGAGAAGAGATTGATAGAATTTCAGCGATTGCTGCCAAGTACGTAGGGAAGCCAGTGGTGAACTATCCGCTACTTTCTCCCTCTTCGGTTCCACCTCGTCCTTTAGAGCTCGGTGTTGGCGGTGGCTATGGCGGACAGGCAGGGATTGGTGGCAGTGGAGACATGTACGGCGGCGGTGCCGGAGATCTTTTGAGGTCGATAAGCGGGCTCACCGAAGCTGATAAGCCGATGATCATAGAGCTTGCAGTTGCGGCCATGGAAGAACTGGTGAGAATGGCTCAGATGGGGGAGCCTCTTTGGATAACCACCCTCGACGGGTCCACCACTGTGCTCAATGAAGATGAGTACATGAGATCTTTTCCTCGTGGAATCGGCCCTAAGCCTACTGGCTTGAAATGCGAAGCTTCTCGAGAAACTGCTCTTGTCATCATGAATCACATCAACCTCGTCGAGATTCTCATGGACGTGAACCAGTGGTCAACAGTGTTCTCTGGTATAGTGTCAAGATCAATGACTATGGAAGTACTGTCAACGGGGGTGGCTGGGAACTACAACGGTGCTTTGCAAGTGATGACAGCAGAGTTACAAGTGCCTTCACCGTTAGTGCCAACTCGAGAGAGTTATTTCGTGAGGTATTGTAAGCAGCACGTTGACGGGACATGGGCAGTGGTGGATGTGTCTCTGGACCATCTCAGCACTGCTCCTGTCAAATGTAGAAGACGACCTTCTGGTTGCTTAATCCAAGAAATGCCCAATGGCTATTCCAAGGTGACGTGGATTGAACATGTAGAAGTGGATGATAGAGGTGTCCATAGTCTATACAAGCAGCTTGTTAGCTCAGGCCACGCATTTGGTGCAAAGCGATGGGTTGCCGCCTTAGATCGACAGTGTGAAAGGCTTGCTAGCGCCATGGCTTCCAACATGCCCACTGGTGATGTTGGAGTGATAACAAACCAAGACGGGAGGAGGAGTATTTTGAAGCTGGCGGAAAGAATGGTGATAAGCTTCTGTGCGGGAGTGAGCGCTTCCACTGCTCACACGTGGACAACACTCTCTGGAACCGGGGCGGATGACGTACGGGTCATGACCCGAAAGAGTGTGGACGACCCGGGAAGACCTCCTGGTATTGTTCTCAGTGCTGCAACCTCTTTCTGGCTCCCAGTTCCCCCCAAGCGAGTCTTCGATTTCCTCCGCGATGAAAACTCCAGAAGTGAGTGGGATATTCTTTCCAACGGTGGGGTGGTCCAAGAAATGGCACACATAGCTAACGGACGAGATACAGGGAATTGTGTGTCCCTGCTCAGAGTGAATAGTGCAAATTCGAGCCAAAGCAATATGTTGATACTGCAAGAGAGCTGCACAGACTCAACGGGCTCTTTTGTGATATATGCACCTGTAGATATAGTAGCCATGAACGTGGTTCTGAATGGAGGGGATCCTGATTACGTGGCGCTTCTTCCTTCGGGTTTTGCTATCCTACCCGATGGTACCACAGCTCATGGTGGTGGCATTGGTGAAACAGGCCACGGTGGATCTCTCTTGACCGTTGCTTTTCAAATCTTGGTTGATTCTGTACCCACTGCTAAGCTCTCTCTTGGATCTGTTGCCACCGTCAATAACCTTATTGCCTGCACTGTGGAGAGAATTAAGGCTTCTTTATCTTGTGAAGCTCCTTGA 2304 0.5069 MPAGIMIPARNMPSLIGRNNNVGGGFGSSSGLCLSQQPNMMDGQLLPALDMAPNTSESDIPRIRDDDFDTATKSGSENQENGASGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMKNQHERHENSHLRAENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPSSVPPRPLELGVGGGYGGQAGIGGSGDMYGGGAGDLLRSISGLTEADKPMIIELAVAAMEELVRMAQMGEPLWITTLDGSTTVLNEDEYMRSFPRGIGPKPTGLKCEASRETALVIMNHINLVEILMDVNQWSTVFSGIVSRSMTMEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHVDGTWAVVDVSLDHLSTAPVKCRRRPSGCLIQEMPNGYSKVTWIEHVEVDDRGVHSLYKQLVSSGHAFGAKRWVAALDRQCERLASAMASNMPTGDVGVITNQDGRRSILKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAHGGGIGETGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCEAP 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0579 767 FunFam Homeobox-leucine zipper protein HDG1 79 167 - -
Alju10g0579 767 SMART START_1 289 508 IPR002913 GO:0008289
Alju10g0579 767 Gene3D - 359 507 IPR023393 -
Alju10g0579 767 ProSitePatterns 'Homeobox' domain signature. 126 149 IPR017970 GO:0000981|GO:0006355
Alju10g0579 767 ProSiteProfiles START domain profile. 280 511 IPR002913 GO:0008289
Alju10g0579 767 FunFam Homeobox-leucine zipper protein GLABRA 2 289 507 - -
Alju10g0579 767 Pfam START domain 290 508 IPR002913 GO:0008289
Alju10g0579 767 Gene3D - 79 168 - -
Alju10g0579 767 CDD START_ArGLABRA2_like 284 507 - -
Alju10g0579 767 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 91 762 IPR042160 -
Alju10g0579 767 SUPERFAMILY Bet v1-like 281 510 - -
Alju10g0579 767 SMART HOX_1 92 155 IPR001356 GO:0003677
Alju10g0579 767 MobiDBLite consensus disorder prediction 59 73 - -
Alju10g0579 767 CDD homeodomain 94 152 IPR001356 GO:0003677
Alju10g0579 767 Pfam Homeodomain 94 150 IPR001356 GO:0003677
Alju10g0579 767 SUPERFAMILY Bet v1-like 528 759 - -
Alju10g0579 767 SUPERFAMILY Homeodomain-like 86 157 IPR009057 -
Alju10g0579 767 MobiDBLite consensus disorder prediction 50 102 - -
Alju10g0579 767 Coils Coil 145 177 - -
Alju10g0579 767 ProSiteProfiles 'Homeobox' domain profile. 91 151 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0579 Alju-ChrAlju10 4768843 4772807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0579 63 765 Homeobox Transcription Factor Family AT1G05230 81.612 0.0 1157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju10g0579 START 7.7e-57 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0415 02 3104661 3108419 Alju10g0579 10 4768843 4772807 CCT
Alju10g0579 10 4768843 4772807 Alju10g0579 10 4768843 4772807 ECH