Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0576 ATGTTCCACGTTGAGCGCAGGACCACCTGGCAACGAAAAAACGAAATTGTTTTCAAACGGCCTGTGAGGGTTTGTTTTCTACCTAAACAGGTGTTTTTAGCTCTCTTGATTGCGAGGCCAGGCCTAATGGCTATGGTGAGGCTACTGTTTATCCTGTTTTTATGCCTTTGGATTTCCTCAGAAGTGGTGGCTAGAACCGGAAATACCTTTACAAACAAGACTAATGTTCCTACGAGGCCAAGCGTTGTGAGAGTCGGAGTACTGTTTACTCTCAATTCGTACATTGGAAGATCAGCAAAACCTGCAATTCTTGCTGCCCTCGATGATGTTAATAATGATACAACCATTCTTCCTGGCATTAAAATGGAAGTTATTTTAGTTGATACAAATTGCAGCGGGTTTCTCGGCACACTGGAAGCTCTGCAGTTCATGGAGAATGAAGTGATTGCTGCTATTGGTCCACAGTCATCCGGAATAGCTCACGTCATATCTCATGTTGCTAATGAACTCCATGTGCCTCTTCTGTCATTTGGGGCTACAGACCCTTCTCTTTCTTCTCTGCAGTACACATATTTTGTCCGCACTACCCACAGTGACTATTTTCTGATGAACGCAGTTGCAGACGTGATTGACTACTTTGGTTGGAAGGAAGTGATTGCCATCTATGTAGATGATGATAATGGAAGAGGTGGGGTTACAGCTCTAGGTGATGCACTTGCAAAGAAGCGTGCCAAGATCTCTTATAAGGCTGCCATTGCTGTTGGAGCCTCTACAAGCGATATCAGTATATTGTTAAATGCGGTAAACCTAATGGAATCGCGGGTCTATGTTCTCCATGTTAACCCTGATACTGGTTTGTCCATTTTTCCTCTTGCAAAGAAACTTGGTATGGTGGGCAATGGTTATGTTTGGATTGCTACAGATTGGCTTCCTTCGGTTCTAGATTCAATAGAACCAGCTGATCCTGACACAATGAATCTCTTACAAGGGGTTATTGCCTTACGCCGTCATACTCCTGACACTGATCTCAAGAAGAGATTTATCTCTAGGCTGAAAAACAGTAAAAACAAGGTGACTACAGGCCTTAATTCCTTTGCATTATATGCATATGATTCAATTTGGTTAGCAGCACGTGCTCTTGATGCATTTCTTTATGAAGGCGGAAATATATCTTTTGGTAGTGACCCCAGATTGCATGACACAAATGGAAGCGCGTTGAATTTTACATCACTTCGTACGTTCAAAGGTGGCCCACAATTTCTCCAGAAAGTTCTAGCAATGAACTTCACCGGTCTGAGTGGTCAAATTCATTTTGATGGGGACAAGAATTTGATCCATCCAGCATATGATATTCTAAACATTGGTGGAACTAGCCGTAGAATTGGTTATTGGTCTAATTACTCAGGCCTGTCAGTTGTAGCACCTGAAATTTTATATACTAAGCCACCCAACATTTCATCTAGCAATCAACATCTTTATGGTGTGATATGGCCAGGAGAGACTACAACAATACCCCGGGGATGGGTGTTTCCCAACAATGGAAAGCCACTGCGAATAGCAGTACCAAACCGAATAAGCTATATGGACTTTGTTTCCAAAAGCAATAACCCCCCAGGAGTTAAAGGTTATTGCATTGACGTCTTTGAAGCAGCCATAAACCTGCTGCCATATCCTGTCCCACGACAATATATATTATATGGAGATGGTCATACAAATCCCAGCTACAATGAAATCACGGATGAAGTTGCACATGGGAATTTTGATGCAGTTGTTGGAGATATAGCAATTGTCACAAGCAGGACAAGGGTTGTGGATTTTACTCAACCTTACACGGAATCAGGGTTGGTTATAGTTGTTCCAGTTAAGGAGGAGAAGTCAAGCCCTTGGTCATTTCTCAAGCCGTTCACTGCGCAAATGTGGTGTGTCACTGGTGCCTTCTTTCTCTTTGTGGGAGCCGTGGTATGGATTCTTGAGCACCGGTTCAATAATGAGTTCCGTGGTTCTAAAAGCAAACAACTTATGACCATTTTTTGGTTTAGCTTCTCAACAATGTTTTTCTCACATAGAGAAAATACTGTGAGCACTTTGGGGAGGCTTGTGTTACTGATATGGCTTTTTGTGGTATTAATCATCAATTCAAGTTACACTGCTAACTTGACATCGATCCTCACAGTACAGCAACTAACATCTCAAATTGAAGGAATCGACAGCTTGATTTCAAGTAATCAACCTATTGGAGTTCAAGATGGGTCATTTACAGCGGATTATCTGACTAGTGAGCTGAATATAGCTAAATCTAGGATGGTGAATCTGAAAAGCGAGCAGGACTATATCGATGCCCTTGACCGTGGACCGCAGGGTGGAGGGGTGGCGGCAATTGTTGAGGAGCGTCCATATATGGAGATATTAATGTCTAAAACTAGGTGTAAATACAGAACTGTAGGCCAGGAGTTCACGAGAAGTGGATGGGGATTTGCATTCCAAAGGGACTCTCCCCTTGCTGCGGACTTGTCAACGGCCATTCTTCAACTCTCTGAGACCGGCGACTCGCAAAGGATCCACGACAAGTGGTTCAAGACATCTAGCTGTTCTGCACAAGCCAATGATTCTGGTTCAAACCAGCTCTCTCTCAGCAGCTTCTGGGGCCTCTTTCTCATATGTGGGATTGCATGCTTCCTTGCTCTGGTTACATTTTTTGTCAGGGTGTTCCTTCAATATAAGAAATATATCCCAGATAGTGAGGAGGGTGAAGAAGATGGAGAGCGTGTTGTGACGCCTGTCAGTGCTAGAAGGACAGTCAGATCCTCCGCTAGCTTCAAGGACTTGTTTGTTTTTGTAGATAAAAAGGAAGCTGAAATAAAGGAAATATTGAGGGACAAAAGTAAGAAACGACGGCGCAGCCGGAGCTTAGATAGGCGCTCTGACCATTCAAACAGCTAA 2940 0.4327 MFHVERRTTWQRKNEIVFKRPVRVCFLPKQVFLALLIARPGLMAMVRLLFILFLCLWISSEVVARTGNTFTNKTNVPTRPSVVRVGVLFTLNSYIGRSAKPAILAALDDVNNDTTILPGIKMEVILVDTNCSGFLGTLEALQFMENEVIAAIGPQSSGIAHVISHVANELHVPLLSFGATDPSLSSLQYTYFVRTTHSDYFLMNAVADVIDYFGWKEVIAIYVDDDNGRGGVTALGDALAKKRAKISYKAAIAVGASTSDISILLNAVNLMESRVYVLHVNPDTGLSIFPLAKKLGMVGNGYVWIATDWLPSVLDSIEPADPDTMNLLQGVIALRRHTPDTDLKKRFISRLKNSKNKVTTGLNSFALYAYDSIWLAARALDAFLYEGGNISFGSDPRLHDTNGSALNFTSLRTFKGGPQFLQKVLAMNFTGLSGQIHFDGDKNLIHPAYDILNIGGTSRRIGYWSNYSGLSVVAPEILYTKPPNISSSNQHLYGVIWPGETTTIPRGWVFPNNGKPLRIAVPNRISYMDFVSKSNNPPGVKGYCIDVFEAAINLLPYPVPRQYILYGDGHTNPSYNEITDEVAHGNFDAVVGDIAIVTSRTRVVDFTQPYTESGLVIVVPVKEEKSSPWSFLKPFTAQMWCVTGAFFLFVGAVVWILEHRFNNEFRGSKSKQLMTIFWFSFSTMFFSHRENTVSTLGRLVLLIWLFVVLIINSSYTANLTSILTVQQLTSQIEGIDSLISSNQPIGVQDGSFTADYLTSELNIAKSRMVNLKSEQDYIDALDRGPQGGGVAAIVEERPYMEILMSKTRCKYRTVGQEFTRSGWGFAFQRDSPLAADLSTAILQLSETGDSQRIHDKWFKTSSCSAQANDSGSNQLSLSSFWGLFLICGIACFLALVTFFVRVFLQYKKYIPDSEEGEEDGERVVTPVSARRTVRSSASFKDLFVFVDKKEAEIKEILRDKSKKRRRSRSLDRRSDHSNS 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0576 979 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 83 935 IPR015683 -
Alju10g0576 979 FunFam Glutamate receptor 628 758 - -
Alju10g0576 979 CDD PBP1_GABAb_receptor_plant 84 474 IPR044440 -
Alju10g0576 979 Coils Coil 946 966 - -
Alju10g0576 979 Gene3D - 198 470 - -
Alju10g0576 979 Pfam Ligand-gated ion channel 860 891 IPR001320 GO:0015276|GO:0016020
Alju10g0576 979 SUPERFAMILY Periplasmic binding protein-like II 493 860 - -
Alju10g0576 979 PIRSF IGluLR_plant 42 979 IPR017103 -
Alju10g0576 979 SMART GluR_14 518 860 IPR001320 GO:0015276|GO:0016020
Alju10g0576 979 SUPERFAMILY Periplasmic binding protein-like I 79 509 IPR028082 -
Alju10g0576 979 Pfam Bacterial extracellular solute-binding proteins, family 3 574 859 IPR001638 -
Alju10g0576 979 Gene3D - 102 446 - -
Alju10g0576 979 FunFam Glutamate receptor 754 862 - -
Alju10g0576 979 Gene3D - 509 627 - -
Alju10g0576 979 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 96 112 - -
Alju10g0576 979 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 369 381 - -
Alju10g0576 979 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 156 184 - -
Alju10g0576 979 Gene3D - 628 764 - -
Alju10g0576 979 MobiDBLite consensus disorder prediction 960 979 - -
Alju10g0576 979 Pfam Receptor family ligand binding region 100 455 IPR001828 -
Alju10g0576 979 FunFam Glutamate receptor 512 628 - -
Alju10g0576 979 FunFam Glutamate receptor 198 360 - -
Alju10g0576 979 CDD GluR_Plant 515 858 - -
Alju10g0576 979 Gene3D - 788 865 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0576 Alju-ChrAlju10 4746238 4752277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0576 79 825 Ion Channels AT1G05200 66.979 0.0 1085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0412 02 3093543 3097143 Alju10g0576 10 4746238 4752277 CCT
Alju10g0576 10 4746238 4752277 Alju02g0410 02 3082794 3086886 CCT
Alju10g0576 10 4746238 4752277 Alju10g0576 10 4746238 4752277 ECH