Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0561 ATGGAGTTACGTTCTCGTAGGCGACTTCCGACCCTTGATACTGATGTAACAAGAAATGAACAACCGCCCATTGATGCCTCTGGAGAAGCTAAAACTGCTAGAGATTGTGGCAATAATGCAAATGAAGTTTCTTCTGGTTCACATTCCAGTTTTGAAGATGAAGAAGCTTCGAGCTTATCTCTTGACTCAAATGAAGAATCTACTTCAAGCTTTTGTACTTCTGATGGGGTAGACGACGTCTCTGATTCATCCAGTAGCCAGAATAGTCAGCGTAGAAAGAAAAGAGGAAAGAAAAGGAAAAAAATCAGCTCAAGGAATGGGGAATCCAGTCAGAACATGGGAGTGATGGAGCATGGAGACAATGATGACTCCCCAAGAGTTCAGCAATCAATTGCCCATGTTTTGGTTGGCCTGAGCAAGAAGAAAAAAACGAAAAGAGCAAGAAAAGATCCAAAGCCAGTGTTGTTGTGGAAGGTGTGGGAAGAGCAGCATGAGAGATGGATTGATGAGAATTTAGCAGAAGATATTGACTTGGATCATCAGAATGAGCTAATGATTGAAACTGCTGAGGCTTCATCCGACCTTACCATGCCGTTACTAAGATACCAAAAGGAATGGCTAGCATGGGCTTTGAAACAGGAGAATTCTGCAATTAGGGGGGGCATTCTTGCAGACGAAATGGGGATGGGAAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCCAACGTGAAACCTGGAAAATGGCTTGTGAACCAGATGAAACATCCTCTTTGCCAGGTTCATCTTCAGCCTTGCCTGGGGTCAAAGGAACGCTTGTTATTTGTCCTGTGGTCGCTGTTACTCAGTGGGTTAGTGAGATTGATAGGTTTACTCTAAAAGGAAGCACCAAGGTGCTAATTTATCATGGAGCCAAGAGAGGGAAGTATGGGGAAGAGTTCTCAAAGTACGATTTTGTAATAACTACATACTCTACTGTTGAATCTGAGTATAGGAAATATATGATGCCTCCTAAGGAGAAGTGCCCATATTGTGGGAAATCTTTTAGCCACACAAAGTTACCTATTCACCAGAAATATTATTGTGGGCCTAACGCCGAGAGAACAGAAAAACAATCGAAGCAGTTCAAGAAAAAGAAAAGAAAACTTAATATAAAGAAAATAGTTCAGATGAAAATGGGACCATCAGATACCAAACACGAGGGGAAGTCACTTTTACATACTGTAAAGTGGCAGCGGATCATTTTGGATGAGGCACACTATATAAAAGCTAGACAATGTAACACTGCCAAAGCAATTCTTGCTCTAGAGTCTTCCTATAGATGGGCGTTAAGTGGAACTCCCCTTCAGAATCGTGTCGGAGAGCTGTATTCTCTGATACGTTTCTTGCAAATAGTTCCTTTTTCCCATTACTTGTGCAAGGACTGTGATTGCAGGATTCTTGATCATAGTTCTAAGGAATGTTCAAACTGCCATCACAGTTCTGTCAGACACTTTTGTTGGTGGAATAAATATGTAGCCACGCCAATTCAAGTATATGGAAACAGTGATCCTGGAAGGAGAGCAATGATGTTGCTTAAACACAAGGTTTTGAAAAATGTAATATTAAGGCGCACTAAATTAGGCCGGGCTGCTGATCTTGCACTTCCACCTAGAATTGTTTCATTGAGAAAGGATAGCCTGGATATAAAAGAGCAAGACTATTATGAATCATTATACAATGAGAGTCAGGCACAGTTTAATACATATGCGGAGTCAAATACTTTGACGAATAACTATGCTCATATATTTGACCTCCTGACCAGACTTAGGCAGGCTGTTGATCATCCATACCTTGTGGTATATTCTCAAGCTGCATCATTAAAAGCTGGGGTTGAGGTTCGCAATGACAATGTTGAACAAGTATGTGGGCTTTGTCATGACCCAGTAGAAGATCCTGTGGTTACCTCATGTGAACACGTCTTTTGTAAGGCATGCTTGATAGACTTCTCTTCTTCCTTGGGGCGAGTGTCATGTCCTTCATGCTCCAAATTACTTACTGTTGATCTAAGTTCAAATAAGGATGTCGGGGATCAGTCTAGAAAAACAACAATAAAGGGTTTCAGATCCTCAAGCATTTTAAATAGAATTCAGCTTGAAAACTTTCAAACAAGTACTAAAATAGAGGCATTGAGAGAAGAAATTCGATTCATGGTGGAAAGGGATGGCTCTGCAAAAGGGATTGTTTTTAGCCAGTTCACTTCATTCTTGGATCTCATACACTACTCATTGCTCAAGTCCGGTGTGTCTTGCGATCAATTGAATGGAAGCATGTCGTTAACTGCTCGGGATGCAGCCATTAAGAGATTTACTGACGACCCAGAATGCAAAATCTTTCTCATGAGCTTGAAAGCTGGTGGTGTTGCCCTCAATTTGACCGTAGCATCACATGTTTTCATTATGGACCCTTGGTGGAACCCAGCCGTGGAGCGTCAGGCTCAAGATAGAATTCACCGAATAGGGCAATATAAACCGATCAGAATCATCAGGTTTGTGATCGAGAACACTATTGAGGAGAGGATTTTGAAGCTGCAAGAGAAGAAGGAGCTAATATTTGAAGGGACTGTGGGGGGCTCTTCCGAAGCTCTGGGCAAACTTACAGAGGAAGACATGAGATTTCTTTTTCATTGGACGACGGCACACACGGATCCCACACAGAACCTTCATACTCGCACTCGCACGCGCTCTTCACTGCCACTGCCACTGCATGTTAAATCAACGATTTCTCCTTCTCGTTTCTTCCCCCACCATCCTCATCTTCTTCTTCCCTTGAAAAGCGGTTCTAGGTTTTGCTTACATCTTAACACGATGATTCAGCTACTCTACTCTTTGATTTTTGGTCAAATGCTTCTAATTCTTGCCCTTCTTTTCAAGACCCCGTTCAGGAAGCTTCTGATTATTACCCTGGATCGGGTCAAGCGAGGTCGGGGCCCCATCGTCGTCTCCACTGTCGGTGCTACATTGCTTATTGTCCTTGCTTCCAGCCTTTATAGTATGGTCAAGATCCAGCGACGAATCCTTGAGGGCGGACTCGTCAATCCCACCGATGAGGTTCTTATGTCCAAGCACATGCTTGAAGCTTCTCTAATGGGATTTGTGCTTTTTCTTTCTTTGATGATAGATAGGTTGCATCATTACATAAGAGAGCTTCGATTACTCAGGAAGACCATGGAGGCTGTTAAGAAACAGAATCGAAGCTTTGAGGATGGTAAAAACAGCAGTGCTGAAGAGCATAAAGCAATGACGGCAGAAGTTGCAACACTGAAGAGCAAAATAAAGAATATGGAATCTGAATGTGAGGCGGAAGGAAGAAAGGCTAAGAATTTGGAAGCTGAAGTGGAGGCTCTGAAAAAGCAGTCTGAAGGGTTCCTCATGGAATATGATCGGCTCTTGGCGGACAATCAGAGTCTTAGGAGTCAGTTGGAGGCGATTGACCAGAGCTCTTCACATGTTGATAACAAGAAGAGCATGTGA 3510 0.4268 MELRSRRRLPTLDTDVTRNEQPPIDASGEAKTARDCGNNANEVSSGSHSSFEDEEASSLSLDSNEESTSSFCTSDGVDDVSDSSSSQNSQRRKKRGKKRKKISSRNGESSQNMGVMEHGDNDDSPRVQQSIAHVLVGLSKKKKTKRARKDPKPVLLWKVWEEQHERWIDENLAEDIDLDHQNELMIETAEASSDLTMPLLRYQKEWLAWALKQENSAIRGGILADEMGMGKTIQAIALVLAQRETWKMACEPDETSSLPGSSSALPGVKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLIYHGAKRGKYGEEFSKYDFVITTYSTVESEYRKYMMPPKEKCPYCGKSFSHTKLPIHQKYYCGPNAERTEKQSKQFKKKKRKLNIKKIVQMKMGPSDTKHEGKSLLHTVKWQRIILDEAHYIKARQCNTAKAILALESSYRWALSGTPLQNRVGELYSLIRFLQIVPFSHYLCKDCDCRILDHSSKECSNCHHSSVRHFCWWNKYVATPIQVYGNSDPGRRAMMLLKHKVLKNVILRRTKLGRAADLALPPRIVSLRKDSLDIKEQDYYESLYNESQAQFNTYAESNTLTNNYAHIFDLLTRLRQAVDHPYLVVYSQAASLKAGVEVRNDNVEQVCGLCHDPVEDPVVTSCEHVFCKACLIDFSSSLGRVSCPSCSKLLTVDLSSNKDVGDQSRKTTIKGFRSSSILNRIQLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIHYSLLKSGVSCDQLNGSMSLTARDAAIKRFTDDPECKIFLMSLKAGGVALNLTVASHVFIMDPWWNPAVERQAQDRIHRIGQYKPIRIIRFVIENTIEERILKLQEKKELIFEGTVGGSSEALGKLTEEDMRFLFHWTTAHTDPTQNLHTRTRTRSSLPLPLHVKSTISPSRFFPHHPHLLLPLKSGSRFCLHLNTMIQLLYSLIFGQMLLILALLFKTPFRKLLIITLDRVKRGRGPIVVSTVGATLLIVLASSLYSMVKIQRRILEGGLVNPTDEVLMSKHMLEASLMGFVLFLSLMIDRLHHYIRELRLLRKTMEAVKKQNRSFEDGKNSSAEEHKAMTAEVATLKSKIKNMESECEAEGRKAKNLEAEVEALKKQSEGFLMEYDRLLADNQSLRSQLEAIDQSSSHVDNKKSM 1169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0561 1169 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 465 IPR014001 -
Alju10g0561 1169 SMART ring_2 635 674 IPR001841 -
Alju10g0561 1169 SMART ultradead3 195 470 IPR014001 -
Alju10g0561 1169 MobiDBLite consensus disorder prediction 37 87 - -
Alju10g0561 1169 ProSitePatterns Zinc finger RING-type signature. 650 659 IPR017907 -
Alju10g0561 1169 SMART helicmild6 750 833 IPR001650 -
Alju10g0561 1169 Gene3D - 201 341 IPR038718 -
Alju10g0561 1169 Gene3D - 553 908 IPR027417 -
Alju10g0561 1169 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 889 IPR027417 -
Alju10g0561 1169 Gene3D - 1086 1149 - -
Alju10g0561 1169 ProSiteProfiles Zinc finger RING-type profile. 635 675 IPR001841 -
Alju10g0561 1169 Coils Coil 365 385 - -
Alju10g0561 1169 CDD DEXDc_SHPRH-like 199 480 - -
Alju10g0561 1169 Pfam Zinc finger, C3HC4 type (RING finger) 635 674 IPR018957 GO:0046872
Alju10g0561 1169 CDD SF2_C_SNF 717 844 - -
Alju10g0561 1169 FunFam B-cell receptor-associated protein 29 1086 1149 - -
Alju10g0561 1169 Gene3D - 346 552 IPR038718 -
Alju10g0561 1169 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 715 879 IPR001650 -
Alju10g0561 1169 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 42 888 - -
Alju10g0561 1169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 634 691 IPR013083 -
Alju10g0561 1169 MobiDBLite consensus disorder prediction 1 125 - -
Alju10g0561 1169 Coils Coil 1055 1075 - -
Alju10g0561 1169 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 537 IPR027417 -
Alju10g0561 1169 Coils Coil 1090 1159 - -
Alju10g0561 1169 Pfam SNF2-related domain 213 612 IPR000330 GO:0005524|GO:0140658
Alju10g0561 1169 SUPERFAMILY RING/U-box 632 679 - -
Alju10g0561 1169 Coils Coil 706 726 - -
Alju10g0561 1169 Pfam Helicase conserved C-terminal domain 719 833 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0561 Alju-ChrAlju10 4558630 4568362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0561 121 887 RAD5 or RAD16-like Gene Family AT1G05120 66.456 0.0 1074
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju10g0561 SNF2_N 1.8e-53 CL0023