Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0535 ATGTCGGATATACGGAAGTGGTTTATGAAATCCCATGACAAGAACAATGCTTCGGAGTCGAAGCCTACGAGCCGAGCCAAGCCTTCTCCAGCTAAACCACAACCGGAAAAACCAGTAGATGGAGACCAAGATAGTACAGGTAAAAGGAAAACCAGCAAACATGTTGCTGCTGACAAAAACAAAAAAGATGAAAAAGAGGCACAGGAACTTCCTGCTAAAAGGAAGAATCCTAAGGACAGTGAGGACTTGCAGAAGCGTCTTCCTAAAAAAATTCATTTAGATGATGAAGATGATGACTCTGACTTGCTCACATCTAAAAGGAAATCAGTTGATACCACCCCAATAAAAAAATTGAAGGGTGAATCTGGTAGGGTAATTCCACTGAAGTCTCCTGATTTGGAAAAAAGCGATGAGGATGATGTTAAAGATGATGCATTACCCATTAAGTCTGGCGGAAGGGGACGTGGAGGAAGAGGAGCATCTGCACCATCATCCAGTGGACGGGGTAGAGGAGGTGGAAGGGGTGGATTTACGAATTTTGGCGAAAGAAAAGATCCTCCTCACAAAGGCGAAAAGGAAGTCCCTGAAGGTGCTCCTGATTGTTTGGTTGGTTTGACTTTTGTCATCAGTGGAACATTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGCGGTCGTGTCACTGGATCAGTCAGCAAAAAAACGAATTATCTTCTATGTGATGAAGATATTGGAGGTCGGAAGTCTTCAAAAGCAAAAGAGCTGGGGACGCAATTTCTCACTGAGGATGGGTTGTTTGACATGATTCATGCATCAAAACCTGCAAAGGCTCCTCCACAGGAAGAATCCAAAAAATTGGTGAATAAGGTTGTTGCAATCCAGTCAAAAAGTCCTCAGAAAGCTGGAGTCAAGGTCTCCCAACCTTCAGGCTCAGCTTCAGCTCCAGTGAAGCCCAAGACAGAAAGTTCTGTACAGTCTTCTTTCATGTGGACGGAAAAGTATCGACCTAAGGTTCCGAATGACATCATAGGAAATCAGTCACTTGTTAAACAGCTTCATGATTGGTTGGCACATTGGAATGAACAATTTCTTGATAGTGGTAAGAAAAAGGGAAAAAAGCAAAGTGACACTGGTTCAAAAAAAGCTGTCTTATTAAGTGGAACCCCTGGCATAGGAAAAACCACTTCAGCAAAGTTGGTCTGTAAGATGCTTGGTTTCCAGGCTATAGAGGTTAATGCTAGTGACAGCCGTGGGAAGGCTGATAGCAAAATTGTTAAAGGAATCAGTGGAAGCAATGCGAACTCTATAAAGGAACTTGTCAATAATGAATCATTGGGCGCTCAGGCAGATCGGGTGAAGGGTTCTAAAACTGTGCTCATCATGGATGAGGTTGATGGCATGTCAGCAGGTGATCGGGGTGGCATTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGCTACAGCCAAAAACTGAAGAGTCTTGTGAACTATTGTCTGCTGCTTAGCTTTCGAAAACCTACAAAGCAACAGATGGCAAAGAGATTGATGCAAGTTGCGAAGGCTGAAGGGCTTCAAGTCAACGAGATTGCTCTTGAGGAGCTCGCAGAAAGAGTTCATGGAGATATGCGCATGGCACTAAATCAGCTACACTATATGAGCCTCTCCATGTCTGTTATTAACTATGATGACATCAGGCAACGCCTTTTGTCTAGCTCAAAGGATGAGGATATTTCACCATTCACTGCTGTTGATAAGCTTTTCAGTTTTAATACTGGGAAGTTAAAAATGGATGAGAGGATTAGTCTTGGCATGAGTGATCCTGACCTTGTTCCTCTTCTTGTTCAGGAAAATTATATTAATTATAGACCAAGTTTGGCTAGTAAAGATGACAATGATATGAAGCGCATGAAGTTAATTGCCCGTGCTGCTGAGTCTATTGCTGATGGAGATATAGTGAATGTACAGATTCGAAGATATCGACAGTGGCAGCTCTCTCAAGCTAGTACTCTCGCATCAACTATAATTCCTGCTTCATTGTTGCATGGGCAAAGAGAAATCCTTGAACCGGGAGAACGGAATTATAATCGGTTTGGTGGTTGGCTTGGGAAAAACTCAACAACGGGCAAAAACTTTAGGCTTTTGGAAGATCTGCATGTTCACATTCTTGCTTCTCGTGAATCCAGTCCGGGAAGGGAAAGTCTCCGTTTGGATTATCTTAAACCACTTCGTCAACAGTTAACAGAACCACTGCGGACCATGCCTAAGGATGAAGCTGTTCAGAAAGTTGTGGAATTTATGAACACGTACTCGATCAGCCAAGAGGATTTTGATACTGTTGTCGAACTATCAAAATTCAAGGGTCATCCAAATCCACTTGATGGCATAGCGCCTGCTGTTAAATCTGCATTGACAAGAGCATACAAAGAAGGAAGCAAGTCTAGGATGGTTCGAGCCGCAGATCTCGTCACTATTCCTGGAATGAAAAAGCCTGTTAAGAAGCGAGTTGCTGCTATCCTAGAACCAGCTGACGAAGGACTGGAACAGGGTGAAGGTAATGCCCTGGAAGAGAGTGAAGAAGAGAATTCCTCAGATACAGAGCAGTTAGGTACCACCACTGGTGAGAAGCTGCAGTCAGAACTTCAAAGTTTAAATTCAAAGGCCATGCAAGTAGAATTGGATTTGAAGGGAACAGGAAGTTCAAGTGCCAAGAAGACACCAGTTGGAAGAGGCAGAGGTGCTTCTGCATCGGCCGGGAAGGGCGGTCAAGCTTCGAGAGGCGGGGCAAAAAGAAAGAGGTGA 2844 0.4353 MSDIRKWFMKSHDKNNASESKPTSRAKPSPAKPQPEKPVDGDQDSTGKRKTSKHVAADKNKKDEKEAQELPAKRKNPKDSEDLQKRLPKKIHLDDEDDDSDLLTSKRKSVDTTPIKKLKGESGRVIPLKSPDLEKSDEDDVKDDALPIKSGGRGRGGRGASAPSSSGRGRGGGRGGFTNFGERKDPPHKGEKEVPEGAPDCLVGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTQFLTEDGLFDMIHASKPAKAPPQEESKKLVNKVVAIQSKSPQKAGVKVSQPSGSASAPVKPKTESSVQSSFMWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNEQFLDSGKKKGKKQSDTGSKKAVLLSGTPGIGKTTSAKLVCKMLGFQAIEVNASDSRGKADSKIVKGISGSNANSIKELVNNESLGAQADRVKGSKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMQVAKAEGLQVNEIALEELAERVHGDMRMALNQLHYMSLSMSVINYDDIRQRLLSSSKDEDISPFTAVDKLFSFNTGKLKMDERISLGMSDPDLVPLLVQENYINYRPSLASKDDNDMKRMKLIARAAESIADGDIVNVQIRRYRQWQLSQASTLASTIIPASLLHGQREILEPGERNYNRFGGWLGKNSTTGKNFRLLEDLHVHILASRESSPGRESLRLDYLKPLRQQLTEPLRTMPKDEAVQKVVEFMNTYSISQEDFDTVVELSKFKGHPNPLDGIAPAVKSALTRAYKEGSKSRMVRAADLVTIPGMKKPVKKRVAAILEPADEGLEQGEGNALEESEEENSSDTEQLGTTTGEKLQSELQSLNSKAMQVELDLKGTGSSSAKKTPVGRGRGASASAGKGGQASRGGAKRKR 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0535 947 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 581 IPR027417 -
Alju10g0535 947 MobiDBLite consensus disorder prediction 1 20 - -
Alju10g0535 947 Pfam Replication factor RFC1 C terminal domain 661 823 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Alju10g0535 947 SUPERFAMILY BRCT domain 197 278 IPR036420 -
Alju10g0535 947 Gene3D - 521 591 - -
Alju10g0535 947 Pfam BRCA1 C Terminus (BRCT) domain 200 274 IPR001357 -
Alju10g0535 947 SMART AAA_5 384 522 IPR003593 GO:0016887
Alju10g0535 947 MobiDBLite consensus disorder prediction 856 947 - -
Alju10g0535 947 PIRSF RFC1 1 921 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Alju10g0535 947 MobiDBLite consensus disorder prediction 181 196 - -
Alju10g0535 947 FunFam Replication factor C subunit 1 521 592 - -
Alju10g0535 947 FunFam Replication factor C subunit 1 593 702 - -
Alju10g0535 947 SUPERFAMILY post-AAA+ oligomerization domain-like 592 737 IPR008921 GO:0003677|GO:0006260
Alju10g0535 947 FunFam Replication factor C subunit 1 333 520 - -
Alju10g0535 947 CDD AAA 381 484 - -
Alju10g0535 947 MobiDBLite consensus disorder prediction 302 332 - -
Alju10g0535 947 Pfam ATPase family associated with various cellular activities (AAA) 388 476 IPR003959 GO:0005524|GO:0016887
Alju10g0535 947 CDD BRCT_RFC1 197 275 - -
Alju10g0535 947 Coils Coil 888 908 - -
Alju10g0535 947 MobiDBLite consensus disorder prediction 864 878 - -
Alju10g0535 947 Gene3D BRCT domain 174 277 IPR036420 -
Alju10g0535 947 MobiDBLite consensus disorder prediction 1 198 - -
Alju10g0535 947 MobiDBLite consensus disorder prediction 879 919 - -
Alju10g0535 947 MobiDBLite consensus disorder prediction 128 149 - -
Alju10g0535 947 FunFam Replication factor C subunit 1 173 276 - -
Alju10g0535 947 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 13 927 - -
Alju10g0535 947 Gene3D - 593 702 - -
Alju10g0535 947 Gene3D - 333 520 IPR027417 -
Alju10g0535 947 ProSiteProfiles BRCT domain profile. 197 278 IPR001357 -
Alju10g0535 947 MobiDBLite consensus disorder prediction 37 118 - -
Alju10g0535 947 CDD HLD_clamp_RFC 521 579 - -
Alju10g0535 947 SMART BRCT_7 199 277 IPR001357 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0535 1 901 Core DNA Replication Machinery Family AT5G22010 67.650 0.0 1108