Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0533 ATGTCAATGGAAATGATGGCAGCTGACCGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTCGCGGTTAGTGTTCCATGCAACAGCTTACTAACCATAGTGACGGTTAGATGTGGGCATTGTGCCAATTTGCTATCAGTCAATATGGGTGCTTCTTCACTTCAAGCGTTTCCTCCTCATCAGAGTCACCCTCAGTCACAGAAACAGAATCTGACTTTTGAAGAACCAAGCAACAAAGATCTGGGATCATCCTCAAAATGCAGCACGTTGGCTCCATTTGAGTCTGTAGAACGTGAGCAACCTAGGATGCCTCCCATTCGCCCTCCTGAGAAGAGACAACGTGTTCCTTCTGCTTATAACCGGTTCATTAAGGAGGAAATCCAAAGGATTAAGGCAAGTAATCCTGATATCAGCCACAGGGAGGCTTTTAGCACAGCAGCCAAAAATTGGGCACATTTCCCTCACATTCACTTTGGACTAAAGCTGGATGGGAACAAGCAAGCCAAGTTGGACTAG 522 0.4579 MSMEMMAADRVCYVHCNFCNTILAVSVPCNSLLTIVTVRCGHCANLLSVNMGASSLQAFPPHQSHPQSQKQNLTFEEPSNKDLGSSSKCSTLAPFESVEREQPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLD 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0533 173 PANTHER PROTEIN YABBY 6-RELATED 1 171 IPR006780 GO:0007275
Alju10g0533 173 FunFam Axial regulator YABBY 107 173 - -
Alju10g0533 173 Pfam YABBY protein 8 162 IPR006780 GO:0007275
Alju10g0533 173 MobiDBLite consensus disorder prediction 58 117 - -
Alju10g0533 173 Gene3D High mobility group box domain 99 157 IPR036910 -
Alju10g0533 173 CDD HMG-box_SF 116 152 - -
Alju10g0533 173 MobiDBLite consensus disorder prediction 58 93 - -
Alju10g0533 173 SUPERFAMILY HMG-box 107 155 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0533 Alju-ChrAlju10 4359674 4365680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0533 1 171 C2C2-YABBY Transcription Factor Family AT1G08465 68.605 4.90e-78 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Alju10g0533 YABBY 3.9e-72 CL0114