Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0516 ATGGCTTCCACGTACTTTCATGGCGGGAATTCTGAGATCCAACCTTCAGGGGATGGTTTACAGACACTTTACCTTATGAATCCAACCTACGTACCTTACTCTGACACTACCTCTCACCACCACCCCACAACCCCTAACATGCTTTTCTTCAATACCAGCGCTTCCCCTTCTCACCACGCGCCCAACCACCCCCACGCGCCGCCTCATCCTGCCCGGACTCCCCACCACCACCTACTTGGTGTCATCCCAACCAACATGGTTGGATCCGAAAACTCCGACATCGCTGCCTTCCACGGCTTTGCCTCCGCCGCCACCGCCACTACTTCTGCTGCGCCGCGGGTTCATAACTTGTGGGGTTCCATAATCGATCATCAACAAACACCGTCATCGCCGGCGGCAGTGTCGGCAGCAACCGCGCCCAGCAGTTCAGGTATGGCGACTACTGCCGGTTTCCGAAGGCCGAGCCAGCAAGGCTTATCACTGAGCCTTTCGTCGCAGCAGACAGCCTTTAATAGGTCGCTTTCTGGTGAGCTCGATATCCCGGGACAGGGACAATCCCGAGTTTCTGCTATATCGCCGACGAGCCATGTCGGTGGTGGTGGTTATGATATGCAGATTCTGGGGAACTCTCCGACGTCGTCGTCGGTGTCGAACGGAATTCCGAGTATGCAGAGCTCGATTTTGGGGTCTAAATATCTGAAGGCGGCACAAGAGCTTCTGGATGAAGTTGTGAATGTGGGGAAGGGAATTGAGAAAAGGGGTTCGATAGAGATTGAAGCGAGTAGTGATAAAGAGAAGATGAAAGTGAATAAATCATCAGAATCGGAATCTGGGAATATCGGTGGTGACGGTGGTTCAAGTGGCGGCAAGCAAGCATCTGAACTCAGCACCGCCCAACGACAAGAGCTTCAGATGAAGAAGTCCAAGCTTGTTTCCATGCTTGATGAGGTGGAACAAAGGTACAGGCAGTACAGGCACCAAATGCAGATAGTGATATCTTCGTTTGAAGAAGCAGCAGGATATGGTGCGGCCAAGTCATACACAGCACTTGCATTAGAGACAATATCGAAGCAATTTCGATGCCTTAAGGATGCAGTGTCTTGTCAGATCAAAGCAACCAGCAAGAGCCTCGGCGAAGACGATTACTTAGGAGCTAAGGTACAAGGTTCGAGGCTCCGGTTTGTCGATCACCATCTCCGGCAACAGCGAGCTCTGCAGCAGCTCGGAATGATACAGCACAATGCTTGGAGGCCTCAGAGGGGATTGCCTGAACGAGCTGTCTCTATTCTTCGTGCTTGGCTTTTTGAGCACTTCCTTCACCCTTATCCCAAGGACTCTGATAAAGTTATGCTTGCAAAACAAACTGGACTTACTCGAAGCCAGGTATCAAACTGGTTTATAAATGCTCGAGTTCGGCTGTGGAAACCAATGGTAGAAGAAATGTACTTGGAAGAAACCAAGGTGCAGAACAACGAGTCCAACCCAAAGGACAACACCACCAATAGATCATCAAAAGAATCAAACAAGGACCCAAATAATAATGAAGCTCACGATGAATCAGGCTCCTTTAATATTAGATCATCATTTGAAGCTCTCCAATCAAAAACAGGTCATCATCAAACATCATTCAACAACCAAACCACGATCACTAATTCCCTACACGACCTCTCAAATCATCCTAATGATCCAATGGGTGTCACTAACGTTTCAATGGACGTGGAAATGAAGCCCCGGTTTATTAAAGACGGGTATAACAACCCGTTATTAAGTGAAGAGGGTTATGGAGGATTAATCTCAATGCAAGACATTGGAAGGTTTAACGTTAGTAATGTTTCTGAACAGCATTTAGCTCCGAGGTTTCATGGGAATGGTGTTTCCCTCACTTTGGGACTCCCTCATCACACTGACAACCTGTCTCTCTCTGCAACTCAACATCATGGCTTTCTCTCTCACAATATACATTTGGGAACCAATGATGCCACTGAGCTTTGTGCCATCAACGCTGCTGCGGCGGCTTCCGCCACCGCTCCTCCGCCATCTTCTCATTCAGGCGCCGCCACCAGCTATGAGAATATTGATATTCAGAACAGAAAGAGATTTGCTGCTCAGTTGTTGCCGGATTTCGTCACCTGA 2133 0.489 MASTYFHGGNSEIQPSGDGLQTLYLMNPTYVPYSDTTSHHHPTTPNMLFFNTSASPSHHAPNHPHAPPHPARTPHHHLLGVIPTNMVGSENSDIAAFHGFASAATATTSAAPRVHNLWGSIIDHQQTPSSPAAVSAATAPSSSGMATTAGFRRPSQQGLSLSLSSQQTAFNRSLSGELDIPGQGQSRVSAISPTSHVGGGGYDMQILGNSPTSSSVSNGIPSMQSSILGSKYLKAAQELLDEVVNVGKGIEKRGSIEIEASSDKEKMKVNKSSESESGNIGGDGGSSGGKQASELSTAQRQELQMKKSKLVSMLDEVEQRYRQYRHQMQIVISSFEEAAGYGAAKSYTALALETISKQFRCLKDAVSCQIKATSKSLGEDDYLGAKVQGSRLRFVDHHLRQQRALQQLGMIQHNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEETKVQNNESNPKDNTTNRSSKESNKDPNNNEAHDESGSFNIRSSFEALQSKTGHHQTSFNNQTTITNSLHDLSNHPNDPMGVTNVSMDVEMKPRFIKDGYNNPLLSEEGYGGLISMQDIGRFNVSNVSEQHLAPRFHGNGVSLTLGLPHHTDNLSLSATQHHGFLSHNIHLGTNDATELCAINAAAAASATAPPPSSHSGAATSYENIDIQNRKRFAAQLLPDFVT 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0516 710 MobiDBLite consensus disorder prediction 486 521 - -
Alju10g0516 710 SMART prehox3 221 368 IPR006563 -
Alju10g0516 710 Pfam Homeobox KN domain 433 472 IPR008422 GO:0003677|GO:0006355
Alju10g0516 710 MobiDBLite consensus disorder prediction 127 156 - -
Alju10g0516 710 MobiDBLite consensus disorder prediction 261 299 - -
Alju10g0516 710 MobiDBLite consensus disorder prediction 51 76 - -
Alju10g0516 710 MobiDBLite consensus disorder prediction 487 501 - -
Alju10g0516 710 MobiDBLite consensus disorder prediction 273 299 - -
Alju10g0516 710 MobiDBLite consensus disorder prediction 502 516 - -
Alju10g0516 710 SUPERFAMILY Homeodomain-like 417 483 IPR009057 -
Alju10g0516 710 Gene3D - 419 498 - -
Alju10g0516 710 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 125 504 - -
Alju10g0516 710 Pfam Associated with HOX 227 367 IPR006563 -
Alju10g0516 710 SMART HOX_1 416 480 IPR001356 GO:0003677
Alju10g0516 710 ProSiteProfiles 'Homeobox' domain profile. 413 476 IPR001356 GO:0003677
Alju10g0516 710 FunFam BEL1-like homeodomain protein 9 419 481 - -
Alju10g0516 710 CDD homeodomain 416 477 IPR001356 GO:0003677
Alju10g0516 710 Coils Coil 300 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0516 Alju-ChrAlju10 4172294 4175886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0516 3 709 Homeobox Transcription Factor Family AT2G35940 41.741 4.80e-136 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Alju10g0516 POX 3.7e-49 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0364 02 2738985 2742091 Alju10g0516 10 4172294 4175886 CCT