Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0450 ATGTACCATCATCACCAACACCAAGGAAAGAACATCCATTCTTCTTCTTCTTCTTCTTCCAGAATGCCAATATCAGCTGAGAGGCACATGTTCCTTCAAACTGGGAATGGCTCTGGTGATTCTGGACTTGTCCTCTCCACTGATGCTAAGCCCAGATTGAAATGGACAGCAGATCTACATGCCAGGTTTATAGAAGCTGTCAATCAGCTAGGTGGAGCTGACAAGGCAACTCCTAAGACAGTAATGAAACTCATGGGTATTCCAGGGCTTACTTTGTATCATCTAAAGAGCCATCTTCAGAAGTATAGATTGAGCAAGAATCTGCATGGCCAAAGTAACAATGTGACACACAAAATCAGTGCAGCAACAGTAGAAAGACTTCCTGAAACAAGTGGAACTCATATGAACAACTTAAGCCTCGCGCCACAGCCTAACAAAGATCTACACATAAGCGAGGCCCTGCAGATGCAGATTGAAGTGCAGAGAAGACTAAATGAACAACTTGAGGTACAGAGACACTTGCAGCTTCGCATAGAGGCCCAAGGGAAATACCTGCAGGCTGTGCTTGAGAAAGCTCAAGAAACACTTGGTAGACAGAATTTGGGGATGGTGGGACTTGAAGCAGCAAAAGTTCAACTCTCAGAGCTTGTGTCCAAAGTATCCTCTCAGTGTTTGAGTTCTGCCTTTTCAGAACTGAAGGAGTTACAAGGATTGTGCCCACAGAAAACACAACAAAACAACCAGCCAAACGACTGCTCAATGGACAGCTGCCTCACATCCTGTGATGGATCTCAAAAGGAACAAGAAATTCAAAATCCAGGGATGGGCTTAAGATCCTTCAATATCCGTACATTCATGGAAAGAAAGGAAGCCATGGAAGCAGCACCTATCCTGAGGAACTCTGAACTCAAGTGGTGCGACGAATTGAAAAAGAACAGCACCTTCCTGAGCAGTCCTTTGGGCAAGGGTTCGGAAAGAAGAGGTTACGCTGCAGAAAGAAGTCCCAGCGATTTATCTATGAGCATCGGACTTGAACGAGAAACTGAGAGATTAATGATGGGGAGAGAATCAGATGGTGAATTCCAACACCGAAACACAAGCAAGCCAGAATCGATTAAACCACTGGAAGAAAAAGTTCCTCAGGAGTATAGATTACCTTATTTTGCAGCGTCGAGACTGGATCTCAACACTCGCGAAGAAAACGATGCCGCGATGAGCTGCAAACAACTGGATTTGAACGGATTCAGCTGGAGCTGA 1257 0.4495 MYHHHQHQGKNIHSSSSSSSRMPISAERHMFLQTGNGSGDSGLVLSTDAKPRLKWTADLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKISAATVERLPETSGTHMNNLSLAPQPNKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGMVGLEAAKVQLSELVSKVSSQCLSSAFSELKELQGLCPQKTQQNNQPNDCSMDSCLTSCDGSQKEQEIQNPGMGLRSFNIRTFMERKEAMEAAPILRNSELKWCDELKKNSTFLSSPLGKGSERRGYAAERSPSDLSMSIGLERETERLMMGRESDGEFQHRNTSKPESIKPLEEKVPQEYRLPYFAASRLDLNTREENDAAMSCKQLDLNGFSWS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0450 418 FunFam Myb family transcription factor 49 107 - -
Alju10g0450 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 107 IPR017930 -
Alju10g0450 418 Coils Coil 151 171 - -
Alju10g0450 418 MobiDBLite consensus disorder prediction 317 337 - -
Alju10g0450 418 Pfam Myb-like DNA-binding domain 52 103 IPR001005 -
Alju10g0450 418 Gene3D - 49 107 - -
Alju10g0450 418 MobiDBLite consensus disorder prediction 1 22 - -
Alju10g0450 418 SUPERFAMILY Homeodomain-like 49 105 IPR009057 -
Alju10g0450 418 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 16 290 IPR044848 GO:0003700
Alju10g0450 418 MobiDBLite consensus disorder prediction 356 376 - -
Alju10g0450 418 Pfam MYB-CC type transfactor, LHEQLE motif 149 195 IPR025756 -
Alju10g0450 418 NCBIfam myb-like DNA-binding domain, SHAQKYF class 50 105 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0450 Alju-ChrAlju10 3642022 3644407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0450 82 418 G2-like Transcription Factor Family AT3G04030 53.235 7.95e-107 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Alju10g0450 Myb_DNA-binding 1.2e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0325 02 2511184 2513796 Alju10g0450 10 3642022 3644407 CCT