LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju10g0444	ATGGCGAGTCACAGACTAGGACAGACTGGTTTGTCTGAGTCATCGCCTTCAGGTCATCACTATGGAGTACTTCACGGAATCAATAATAATACTCCTGCATCGGCAGCAGCAGCATCCACCTTAATTAATCAAGGGTCTGCTTTTGATTTTGGAGAGCTGGAAGAGGCAATTGTTCTGCAAGGAGTAGGGATTAGAAATGATGAAGGCAGAGCACCTTTATTCATTTCCAGGCCTGCAGCTACTACTCTGGAAATGTTCCCCTCTTGGCCAATCAGATTTCAGCAAACCCATAGAGTAGTAGGAGGATCAAAGTCAGGAGGTGAAAGCACTGATTCAGGATCTGGTGTTAACACCACATCAAGCAAAAGTGAACCTCACTTTGAATTTGAACCAGAATCTCCCATTAGTAATAAGAAAGCTTCTGCTTCTTCTTCAGAACTTCATCATCAGAAGCAAGTGATGGCAAGTGGTGGTGCCTTAAGAACAGGCCCATCACAGAATCAATCACCTGCCAAATCACCTCAGGAAAAGAGGAAAGGGGCTGGTTCTTCATCATCAGAAAAACAACTTGATGCAAAGACACTCAGACGTCTAGCTCAAAACAGAGAGGCTGCTCGAAAGAGCCGTCTGAGGAAAAAGGCTTACGTGCAGCAGTTAGAATCGAGTAGGATAAAGCTTACACAACTTGAACAAGACCTTCAAAGAGCACGCTCTCAGGGACTATTCTTAGGCTGTGCTGGTGCCGGTGGCAACATAAGCTCTGGAGCTGCAATATTTGACATGGAATATGCAAGATGGTTAGAGGAAGACCACCGGCACATGACGGAGTTACGGGCGGCGCTACAAGCGGCGTTATCAGACGGCGAGTTAAGAATAATGGTGGACGGATATGTGTCACATTACGATGAGATCTTCAGGCTCAAAGGAATCGCTGCAAAAACAGACGTCTTTCATCTCATTACAGGCATGTGGACTTCTCCTGCTGAACGTTGCTTCCTTTGGATGGGTGGTTTCAGACCCTCTGAACTCATCACGATGTTGATACAGCAGTTAGAGCCACTGGCTGAGCAGCAGATTATGGGAATGTATGGTCTCAGACATTCCTCACAGCAAGCAGAAGAGGCTCTCTCTCAAGGCCATGAGCAACTCCAACAGTCCCTCGTCGACACCATCGCCGGCGGCCCTGTCGGTGACGGCGTGCAACAGATGGTCATCGCCATGAGCAAGCTCTCCAATCTTGAAGGATTCGTCCGACAGGCGGATAACTTGAGGCAACAGACACTGCACCAGTTATGTAGATTGCTGACAATAAGGCAATCAGCAAGATGCTTCCTTGTAATGGCAGAGTATTATGCTCGCCTTCGTGCCCTTAGTTCTCTTTGGGCTTCCAGACCTCGAGAGACGATGATGAACGACGAGAACTCGTGCCAAACGACAACGACGGAATTGCAAATGGTGCAACCACCTCCTCCTCATCATCATCATCAACAGAATCATTTTGCTGGTTTCTGA	1512	0.4755	MASHRLGQTGLSESSPSGHHYGVLHGINNNTPASAAAASTLINQGSAFDFGELEEAIVLQGVGIRNDEGRAPLFISRPAATTLEMFPSWPIRFQQTHRVVGGSKSGGESTDSGSGVNTTSSKSEPHFEFEPESPISNKKASASSSELHHQKQVMASGGALRTGPSQNQSPAKSPQEKRKGAGSSSSEKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQRARSQGLFLGCAGAGGNISSGAAIFDMEYARWLEEDHRHMTELRAALQAALSDGELRIMVDGYVSHYDEIFRLKGIAAKTDVFHLITGMWTSPAERCFLWMGGFRPSELITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGHEQLQQSLVDTIAGGPVGDGVQQMVIAMSKLSNLEGFVRQADNLRQQTLHQLCRLLTIRQSARCFLVMAEYYARLRALSSLWASRPRETMMNDENSCQTTTTELQMVQPPPPHHHHQQNHFAGF	503

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju10g0444	503	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	191	235	IPR004827	GO:0003700\|GO:0006355
	Alju10g0444	503	PANTHER	TRANSCRIPTION FACTOR TGA9	143	467	-	-
	Alju10g0444	503	MobiDBLite	consensus disorder prediction	136	151	-	-
	Alju10g0444	503	MobiDBLite	consensus disorder prediction	99	124	-	-
	Alju10g0444	503	ProSiteProfiles	DOG1 domain profile.	256	464	IPR025422	GO:0006351\|GO:0043565
	Alju10g0444	503	MobiDBLite	consensus disorder prediction	476	503	-	-
	Alju10g0444	503	Pfam	Seed dormancy control	273	348	IPR025422	GO:0006351\|GO:0043565
	Alju10g0444	503	MobiDBLite	consensus disorder prediction	159	189	-	-
	Alju10g0444	503	SMART	brlzneu	189	254	IPR004827	GO:0003700\|GO:0006355
	Alju10g0444	503	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	196	211	IPR004827	GO:0003700\|GO:0006355
	Alju10g0444	503	MobiDBLite	consensus disorder prediction	99	194	-	-
	Alju10g0444	503	Gene3D	-	192	241	-	-
	Alju10g0444	503	SUPERFAMILY	Leucine zipper domain	193	236	IPR046347	GO:0003700\|GO:0006355
	Alju10g0444	503	MobiDBLite	consensus disorder prediction	1	16	-	-
	Alju10g0444	503	CDD	bZIP_HBP1b-like	193	244	-	-
	Alju10g0444	503	Coils	Coil	212	239	-	-
	Alju10g0444	503	FunFam	BZIP family transcription factor	192	241	-	-
	Alju10g0444	503	MobiDBLite	consensus disorder prediction	1	25	-	-
	Alju10g0444	503	Pfam	bZIP transcription factor	192	234	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju10g0444	Alju-ChrAlju10	3606892	3613337	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju10g0444	148	503	bZIP Transcription Factor Family	AT1G08320	67.787	9.44e-178	501

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Alju10g0444		DOG1	6.2e-31	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Alju02g0322	02	2485498	2492018	Alju10g0444	10	3606892	3613337	CCT