Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0438 ATGATGGGTCTGAGAGATCAGTACTACTACAATAATCCCTACTTTCATGCTTCTCCAACTTTCATAGAATGGCTCAAACCATTATCATCATCTTCTTCTTCTTCCTCTGATGATCAGACTTATCAAAACGAGGTCGTTCGCGAGACTATCCAGTTTCTGCCTCTATCGAAAGATTTCGAGGTTAAAGAGGATAATAATCAAAAGGAGGTGTTTGGATCATCAGTGAAACAAGAGAAAGTGTTGCTGGAGCAAGTTGGGGTGGCTTTGCACATTGGGTTGCCTACTAATAATAATTACACAGAAGACAATAGTGGTGATATGAAAAAGAAAGTTAAAGAAGAAGATGATGAAGATGAAGATGATGAGGAGGAGGAAGAAGAAGGCATGAGGATGAAGATGAAGAGAAGCTTTCATGGATTTAATAACCAGCTGGAGAGAAGGTTCTGGATACCAACTCCTGCACAGATCCTAATTGGGCCGATGCAATTTGCTTGCTCTATATGCAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGGTCCGAATTTAGGAAAGGACCAGACTCACTAAGAGGAACACAACCAGCAGCAATGTTGAGGCTACCATGTTATTGTTGTGCTCATGGCTGCAAGAACAACATCAACCACCCAAGAGCCAAGCCATTGAAGGACTTCAGAACCCTGCAGACACATTACAAGAGAAAGCATGGCACTAAACCCTTCATGTGCAGAAAATGTGCAAAAACTTTTGCTGTTAAAGGAGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTATGGTATTGCACTTGTGGTTCAGATTTCAAGCACAAAAGGTCCCTTAAGGATCATATTAGGTCTTTTGGAAAAGGTCACAAACCCCATCCTTCTCTTGAAGGTTTTGAGAAGGACTCTGAAGAAGATGAAGCTATCACTACTACTACTATTCACACATAA 975 0.4144 MMGLRDQYYYNNPYFHASPTFIEWLKPLSSSSSSSSDDQTYQNEVVRETIQFLPLSKDFEVKEDNNQKEVFGSSVKQEKVLLEQVGVALHIGLPTNNNYTEDNSGDMKKKVKEEDDEDEDDEEEEEEGMRMKMKRSFHGFNNQLERRFWIPTPAQILIGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCAKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHKPHPSLEGFEKDSEEDEAITTTTIHT 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0438 324 SUPERFAMILY beta-beta-alpha zinc fingers 233 267 IPR036236 -
Alju10g0438 324 MobiDBLite consensus disorder prediction 93 130 - -
Alju10g0438 324 FunFam Zinc finger protein WIP2 216 298 - -
Alju10g0438 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 190 IPR013087 -
Alju10g0438 324 SUPERFAMILY beta-beta-alpha zinc fingers 154 186 IPR036236 -
Alju10g0438 324 Gene3D Classic Zinc Finger 162 185 - -
Alju10g0438 324 PANTHER ZINC FINGER PROTEIN WIP2 26 315 IPR043584 GO:0003700|GO:0010468
Alju10g0438 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 267 300 IPR013087 -
Alju10g0438 324 Gene3D Classic Zinc Finger 205 295 - -
Alju10g0438 324 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Alju10g0438 324 SMART c2h2final6 247 267 IPR013087 -
Alju10g0438 324 SMART c2h2final6 163 185 IPR013087 -
Alju10g0438 324 SMART c2h2final6 210 242 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0438 Alju-ChrAlju10 3555156 3558010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0438 18 312 C2H2 Transcription Factor Family AT1G08290 56.805 3.33e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju10g0438 None None None