Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0409 ATGCCTACCCACAAAAACAACCGCACCGCCCAGATTGAGTCTCACCGGAGAGGGAAGTTATTAAGCGATAAATCGTCTTCGTTTCACGGCGGCCAGAGCTCGGAGACGGCGGCGATGTCCTCTCAACTTCGCCGACCAAAGACTGTGCCGGATCTCGTCTCACATAGAAGCCACGCCGGGTCGCCGCCGGACGGCGGACTGCCCCGGCAACCGCCAAAGCTGCTGCTTCACGTGACTTTTCTGGGGAGTCTGGGACCGGTTAAGGTCGTGATGACGCAGGAATCAAAAGTGAGTGATCTGGTGGCGGCGTCGGTCCGACAGTACCTGAAAGAAGGTCGCCGGCCAATCTTGCCCACCACCGACCCCTCTGCCTTTGACCTCCATTATTCGCAGTTCAGCCTAGAAAGTGTGGATAGAGGGGAGAAGTTGATGGAGCTCGGGTCAAGGAATTTTTTGCTGTGCTCGAGAAAGGCGGCGACGCCAGACACGGCGGTGGGTGGCACCGGGGAAGGCGGAAGCATGTCGACGACCGTGTTAGGACAGTGTTCGAAGGAAGCGGAGAAAGTCGGCAAGCAGAGTGGGTTTGCTTGGCTCAAGTTCTTGGATTTCTTGCTATATGCGATTCATCCTGGTTATGACCTCAGTTGTTATTGTGCTAGATGCAATTATCGAGAGAAAACCGTGGAAATTTCCAGAAATAGAAAGACTGTTGAGGATCCCAAAGTTAGATGGCAGGAAAAGGGTTTATACAAGGAGGAGTTAGTGTTACACTCAAAAACTTTCTTCCTTCTCTGCTGTGGTCTGAGCTGGTTTCAGTTCTTGCCACGAGGAATCCTTGACGGCGTTGAGGTCAAGGCTGGGGTACCCGTTGAAGTAGACCCAGAAGAGTTTGATAAATGCATACACCTGTCTCAGGCTGCTCTTGGCGAGGCAAAAAATAAAGCAAGCGAACCTGTGTTCCTTTATCTGAAGATTGATGACCAGAAGCTTGTTTTAGGAACCCTTTCCCAGGAGAAATTCCCTCAACTATCTTTTGATTTGGTTCTAGAGAAAAAGTTTGAGCTCTCTCACAATTGGAAAAGTGGAAGTGTTTATTTCTGTGGTTACAGGGCGGAATTACCAGGATATCCTTCGCACTTCACGGAGATGGACGGGGACATGTCTGACAGTGAGGATGAGGAGGCTATCCCATTGACGATCAAAGATAATGCAAAACCTGATATAAGGCCTGAAGTAGGAAAGGCTGCTGCATCTAAAAGTAAAGATGACAAGCCTGCTGATTCAAAAAAGCAAGTCAAGGTTGTGGATCCAGTGAAAGATGAAGAGGATGATTCATCAGATGATGACGAGGATGATGAATCAGATGATGAAGATGACAGTCCTGATGAGGTTATGTTGGGTGGTGTTGGTGATAGTAGTGATGAGATTAGCGAAGATGATGATGAAACCCCTCCTAAGAAGGTTGATCATGCTAAGAAGAGACCTAATGAATCTGCCCTTAAAACTCCTGTTCCTGCCAAAAAAGCAAAATCTGCTACCCCTCAAAAGACCGGTAAGGCTTTCTTAGGTTGTGGTCTTTTGTTTGGGTTGACTTGTGAGTTTCAAGAATGGGAGGGGAGCAAGGTAGCCAAAGATGGTAAGAAAGGTGGCCATGTAGCAACTCCTTATCCACTGAAGAAGGATGGAAAGGCTCCTAAAGGCGACCAAACTCCCAAATCCGGGGGACAGTTTATGTGCAAATCTTGTAGCAAGACTTTTAACTCAGAAGGGGGTCTGCAACAACATTCAAAGGCTAAGCATGGGGGTCAAAGCGAGTTAAATTTTAGATCACCTAACTCGCCAAAACACTTGAACCAACTAGTGCTGAAGAAAACATTCCAAATGTTCAAATCAAGTCTAAAAAGACCACTTACAGCAACGAGTGTTCCAGTGCCAAAAGCCAATGACCTAGATGCTACAAAGTACAAACATAAACATCAGTTCTATTTTAGCCTATAA 1998 0.4735 MPTHKNNRTAQIESHRRGKLLSDKSSSFHGGQSSETAAMSSQLRRPKTVPDLVSHRSHAGSPPDGGLPRQPPKLLLHVTFLGSLGPVKVVMTQESKVSDLVAASVRQYLKEGRRPILPTTDPSAFDLHYSQFSLESVDRGEKLMELGSRNFLLCSRKAATPDTAVGGTGEGGSMSTTVLGQCSKEAEKVGKQSGFAWLKFLDFLLYAIHPGYDLSCYCARCNYREKTVEISRNRKTVEDPKVRWQEKGLYKEELVLHSKTFFLLCCGLSWFQFLPRGILDGVEVKAGVPVEVDPEEFDKCIHLSQAALGEAKNKASEPVFLYLKIDDQKLVLGTLSQEKFPQLSFDLVLEKKFELSHNWKSGSVYFCGYRAELPGYPSHFTEMDGDMSDSEDEEAIPLTIKDNAKPDIRPEVGKAAASKSKDDKPADSKKQVKVVDPVKDEEDDSSDDDEDDESDDEDDSPDEVMLGGVGDSSDEISEDDDETPPKKVDHAKKRPNESALKTPVPAKKAKSATPQKTGKAFLGCGLLFGLTCEFQEWEGSKVAKDGKKGGHVATPYPLKKDGKAPKGDQTPKSGGQFMCKSCSKTFNSEGGLQQHSKAKHGGQSELNFRSPNSPKHLNQLVLKKTFQMFKSSLKRPLTATSVPVPKANDLDATKYKHKHQFYFSL 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0409 665 MobiDBLite consensus disorder prediction 9 23 - -
Alju10g0409 665 ProSitePatterns Zinc finger C2H2 type domain signature. 579 600 IPR013087 -
Alju10g0409 665 MobiDBLite consensus disorder prediction 398 440 - -
Alju10g0409 665 MobiDBLite consensus disorder prediction 25 43 - -
Alju10g0409 665 MobiDBLite consensus disorder prediction 480 497 - -
Alju10g0409 665 MobiDBLite consensus disorder prediction 1 71 - -
Alju10g0409 665 Gene3D Nucleoplasmin core domain 278 373 - -
Alju10g0409 665 MobiDBLite consensus disorder prediction 541 573 - -
Alju10g0409 665 PANTHER BNAC05G50380D PROTEIN 28 201 IPR040358 -
Alju10g0409 665 MobiDBLite consensus disorder prediction 398 516 - -
Alju10g0409 665 SMART c2h2final6 577 600 IPR013087 -
Alju10g0409 665 ProSiteProfiles Zinc finger C2H2 type domain profile. 577 605 IPR013087 -
Alju10g0409 665 MobiDBLite consensus disorder prediction 441 464 - -
Alju10g0409 665 MobiDBLite consensus disorder prediction 590 614 - -
Alju10g0409 665 Pfam Nucleoplasmin-like domain 281 369 IPR041232 -
Alju10g0409 665 FunFam Histone deacetylase HDT1 278 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0409 Alju-ChrAlju10 3230692 3240259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0409 281 372 C2H2 Transcription Factor Family AT5G03740 55.435 1.84e-29 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju10g0409 NPL 6.1e-09 CL0055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0289 02 2202386 2203965 Alju10g0409 10 3230692 3240259 CCT