Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0398 ATGGAGGCCCCTGTCGTTAGATCGAGGGGTCGGCCGAGGAAACGGAGGAGAAAAGAGGATGAAAATGGGACGGACGATGGGAGATCGGTTCCCGATTTGAAAAGGCAAGCTGTGGGGACTAGGAGACCGATAGCACTGGTTGGACGATATATACTTAAAGAGTTTAAGGGAAGCGGGGTCTTTCTGGGGAAAGTTGTGTATTACGACTGTGGTTTATATAGAGTCAATTACGAGGATGGTGATTATGAGGATTTAGATAGCAGCGAGATTCGTGGAATGCTTCTCAACGACTGTGATCTTGATGATGAGTTGTCTAGAAGGAGCAATAAATTAGATCAATTGGTGCTGAAATATAGTGCCAAGGAAACACATGACACGGAGAATAGTTCTGCTGACTTAAACAAAGATGTCCTCGGTCTTGAGGCCCCTGTGTCAAGTGAATTGCCTGGTGGGTCATTGATTGATCCCGACGAGGTAGATGTTGAGGAGGATGCTCATTCATCAAGTGACGAAAGAGATTCCGCGTCTGATGCTGAGATACCTTTTCTACCTCCTCCACTGCAGTTGCCACCGTCTTCAGGGACTATTGGGGTGCCAGAGCTATATGTCTCTCATCTTCTTGCAGTCTATGGATTTTTACGGTCATTCAGCATTCGCCTGTTTTTAAGTCCGTTTTCTCTGGATGATTTTGTTGGTTCTCTTAATTGCCAAGTTTCAAATACTTTGTTTGATTCCATTCATGTTTCACTGATGCGCGCATTGAGGCGTCATCTTGAAACTCTTTCATCTGAGGGCTCAGAGCATGCATCAAAATGCTTGAGGTGTAATGATTGGAGCTTGCTTGATGCATTGACTTGGCCTGTTTTTGTTATTCAATATCTAGCAATTTATGGATACACAAAAGGACCTGAGTGGAAAGGATTTTATGATGAGATTTTTAATGGTGAATATTATTTATTACCTGTAAGTAGGAAGTTGACCATACTGCAAATTCTTTGTGATGATGTTTTGGAGTCCGAGGAAATGAAAGCTGAAATGGGCATTCGTGAAGAATTAGAAGTTGGGATGGAGTATGATGCTCAAGATATTCTTCCAGAAGAAAACTGGCCTAGATCACATCCAAGAAATTCTAAAATTGCTAGCATGGATAAAGAAGCTAAAAAGTTTGGTTTAGAATCTAATGCTGTGAAGCCACCTGGTAAATCTGTTCTAGATTTCAGAGACTCTAGAAGGACTGAGGATGCTGATGTTGACAGAAATGGAGATGAATGCCGTCTCTGTGGCATGGATGGGACCTTGATTTGTTGTGATGGATGTCCGTCTGCATATCACTCTAGGTGTATTGGAGTGATGAAAATGTTTATACCAGAAGGGCCATGGTATTGTCCTGAGTGCAAAATTAATACGAATGGGTTAAGCATTGTACGTGGAACATCACTTAGAGGGGCTGAATTATTTGGAATGGATCCGTATGGACAACTCTTCATGGGTACTTGTGACCACTTACTGGTACTCACTGTCAACAGTGAACTTTGTCTCAGATATTACAACCAGAATGACATCTTAAAAGTTCTCCAAGTGCTTTGCGCTTCAGTAGACCATAGGCCCCTATATTCTGGAATTTGTATGGCTGTGTTACATTATTGGAGTATTCCAGAAAGTATCCTGCCTCTATCTGTTAGAACTGGAACAGATGTTAACAATTCAAGTACAGAGGAAGATGCAAAGTTCTCTAGTTTATCAACCACTACTTTGGTTGCCAAAGATCATACATCTATTGATTTAGTGAAGGCAGAACACCCTGTATCCAGTGGTATTGTAATTCATGGTAATTACACGGTTCCATCTGACTCGTTGGTTACCACTACCAGAGAGGCCTGTGCTTTTCATAGCAGCAATGACACTAGAACTAGAGAATGCTATACTATGAATATTACATTTCCTAAGGAGACTAGAATGGCGTCAGTCATCTCTGGTGGCCCTGGTGGCCATCAGCGCGGTCTCTTTGATGTGACCAACAGTCTTGGACATGTAAATGATAAGCAGTTGCCTTTTACTCCATCCTTGCAACCTAAAGAAGGCAACCAAGCTTGCTCTGGAAAGGTTGAGCATTACCCAACTAAGGATTTTGCATACACGGGTTTTTCTTTTAAGCCTCAGTCTTACATTAATCACTATATACATGGTGATTTTGCTGCATCTGCCGCTGCTAAGTTGGCTATTCTTTCTTCTGAGGATTCTAGGTCAGAGGGTCATGTCTCAGATAATTTGAGGAAATTTACAGCTGAAAGTGCTTCTTTGCAAGCAAAAGCATTCTCAATGACAGTTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTGGAAGTTCCAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCGTCAGCCTCAAGCAAGAGAGGCTGCATGCTAAATCATGCTGCCCTGAGTGCCACCAAAAGTGCAATAAAAGTTTTAAGTGGTCTTTCTACTGTAAGGAGTGGAGAGGGAAGTCTTCCAAGCATCGCAACATATATCATATATTTGGAGGAAAGCTTACATGGTTTAATAGTTGGGCCTTTTCTAAATGCAAATTACCGAAAACAATGGCGTAAACGAGTTGAACAGGCCAAAACATTTAAAGCTATAAAGCCTCTTTTGCTTGAACTTGAGGAAAACATTCGCATAATATCTTTTACTGGCGAGTGGGTTAAGTTGATGGATGATTGGTTGGTTGAATCTTTTATTATTCAAGGTGCTTCAAGTTCTGTAGGAACAATACAGACACGTGCACCAAGTGGAAGGCGCCACAAGAAACAATCAGCTATTGATGAAGTTACAGCTGATGTTTCTCAAGAAAACAATTTTGACTGGTGGCATGGTGGTAAATCCATGAAAATATTATTTCTAAAAGCAGTTTTGCCAAAATCTGCAGTCAGAAAAGCAGTTCGCCAAGGTGGGTTGAAGAAAATTTCTGGTATTTCCTATGCTGATGGCTGTGAAATCCCTAAAAGAAGCAGACAGATAGTTTGGAGAGCTGCAGTACAAATGAGTAGGAATGCATCACAGCTCGCACTTCAGGTCAGATACCTTGATTTTCATCTTAGATGGAGTGATCTGATTTGTCCTGAGCAAAATCTCCAGGATGGGAAAAGTCAAGAGACTGAATCTTCTGCGTTTAGAAATGCTAATATCTGTGATAAGAAAGAAGCGGGGGGGAGACTTTTGTATGGAGTTGTTTTTAGGAACCAAAAGCATCTTCCTTCTCGTATAATGAAAAACATTGTTGAAGTTGAGCAAGGTCTAGAAGGAAAGGAAAAGTATTGGTTTTCTGAAGCACGTGTTCCTTTATATTTGATAAAAGAGTATGAAGAAGGTATAGAAAAAAAGCCATGTCATCAAGAGAATTTAAAGTTGGAATCTCAGCTGCTAAGAAGGCGGTTGAAAGCTGCTTGCAAGGATATATTTTTTTACCTTACCTGCAAGAGAGACAACTGGGACATATTTTCATGTGCTGTATGTCAGATGGATGTTTTAGCTGGGAATGCTCTCAAGTGCAATGCATGTCAAGGTTATTGCCATGAGGGCTGTTCTATAAGTTCAACGTTCTCTACAAAAAAGGAGGTTGAGTTCTTAGCCACATGCAAGCGCTGTTATGTCAAATTGCTTGCTCAAAAAAAGACCAGTGACGAATCTCCAACCAGTCCCTTACTCTTGCAAGGACAAGAACATAGCTCTGTCACTGTTCTGAAGGGACAAAGACCTAAATGTTATGATCAAGCCTTGAAACCTATCAGCATCAAGGATACTTGTCCTGACACGAAAGAAGGCGCTCCTGATTCTGCTCTAGCAACGAAAAACCGTCGCAGGTCTTGTTCTTGGGGTATTATATGGAATAAGAAGAGTGAGGATACAGGCGTTGATTTTAGGCTTAAAAATATACTTCTAAAGGGAAGTATAGGTGCACCTGGATTACAACCTGTTTGTCACTTGTGCCGTAAGCCATATAGGTCTGATCTGATGTATGTCTGCTGTGAGACATGCAAAAATTGGTATCATGCTGATGCTCTTGAATTAGATGAGTCAAAAATTTGTGAAGTGTCGGGCTTCAAATGCTGCAAGTGTCGCAGGATAAAGTCTCCAGAGTGTCCTTATTCTGATAAGAAGCCCAAGATGCAGGGGAGCACTAAGAAACACCGGAGACCTTCAAAGAAGGATAATTCTAGCACTGGCCATTTTGGAGTTATTTCTGAACCACAAGAGTTTGAGCCTGCTACCCCTAACTTTCCTATGGGAGATGATGGATTGAGACATGACAATGACCCTCTGCTTTACTCTCTTTCAAGTGCTGAGCTGATAACAGACCCTAATGCAGAAGCGAATGCTGTCTCTGGTCTGGGGCTTGGGAAACTACCGGTGAGAAGACACATTAAGCGTGAGGGGGATGGTGATGAATCCTTTGGAACTAAACTTTCACAGGCTGAAATTTTAACACACAATGGAACAGGTAGTCTGTCAGCTGTGGAGAAGGCATCATCTCCTGTGGAATATGACCCTGCTGTTTGCTTTGATAGTAATCTGCTGAATGACTGTGGAAATGAAACTTACGAGTTCATGGACTTTGAACCCCATACCTACTTCTCTGTAACAGAATTGCTACAGCCAGATGATAATCACTTTGAGGGAGCTGATGGATCTGGGGACTTGTCTGGATACTTGGAAAATGTTTCTACTGCAAATATAGATGGCATTCCTGAAGAATCTGGAGCTCTTTGTTTAGTTGATAAACTAGAACCTGCGGCTTATATACCAGGCAGTGGTTACCATTGTTGCAAATGCTTGCAGATGGAACCAGCTCCTGATCTCTGTTGTGACATTTGTGGGATTTGGATTCACAGCCAATGTTCACCCTGGGTTGAATCACCTTCTAGGTTAGGAAGCTGGAGGTGTGGTAATTGTCGTGAATGGCAATAG 4983 0.4186 MEAPVVRSRGRPRKRRRKEDENGTDDGRSVPDLKRQAVGTRRPIALVGRYILKEFKGSGVFLGKVVYYDCGLYRVNYEDGDYEDLDSSEIRGMLLNDCDLDDELSRRSNKLDQLVLKYSAKETHDTENSSADLNKDVLGLEAPVSSELPGGSLIDPDEVDVEEDAHSSSDERDSASDAEIPFLPPPLQLPPSSGTIGVPELYVSHLLAVYGFLRSFSIRLFLSPFSLDDFVGSLNCQVSNTLFDSIHVSLMRALRRHLETLSSEGSEHASKCLRCNDWSLLDALTWPVFVIQYLAIYGYTKGPEWKGFYDEIFNGEYYLLPVSRKLTILQILCDDVLESEEMKAEMGIREELEVGMEYDAQDILPEENWPRSHPRNSKIASMDKEAKKFGLESNAVKPPGKSVLDFRDSRRTEDADVDRNGDECRLCGMDGTLICCDGCPSAYHSRCIGVMKMFIPEGPWYCPECKINTNGLSIVRGTSLRGAELFGMDPYGQLFMGTCDHLLVLTVNSELCLRYYNQNDILKVLQVLCASVDHRPLYSGICMAVLHYWSIPESILPLSVRTGTDVNNSSTEEDAKFSSLSTTTLVAKDHTSIDLVKAEHPVSSGIVIHGNYTVPSDSLVTTTREACAFHSSNDTRTRECYTMNITFPKETRMASVISGGPGGHQRGLFDVTNSLGHVNDKQLPFTPSLQPKEGNQACSGKVEHYPTKDFAYTGFSFKPQSYINHYIHGDFAASAAAKLAILSSEDSRSEGHVSDNLRKFTAESASLQAKAFSMTVSRFFWPSSEKKLVEVPRERCGWCLSCKASASSKRGCMLNHAALSATKSAIKVLSGLSTVRSGEGSLPSIATYIIYLEESLHGLIVGPFLNANYRKQWRKRVEQAKTFKAIKPLLLELEENIRIISFTGEWVKLMDDWLVESFIIQGASSSVGTIQTRAPSGRRHKKQSAIDEVTADVSQENNFDWWHGGKSMKILFLKAVLPKSAVRKAVRQGGLKKISGISYADGCEIPKRSRQIVWRAAVQMSRNASQLALQVRYLDFHLRWSDLICPEQNLQDGKSQETESSAFRNANICDKKEAGGRLLYGVVFRNQKHLPSRIMKNIVEVEQGLEGKEKYWFSEARVPLYLIKEYEEGIEKKPCHQENLKLESQLLRRRLKAACKDIFFYLTCKRDNWDIFSCAVCQMDVLAGNALKCNACQGYCHEGCSISSTFSTKKEVEFLATCKRCYVKLLAQKKTSDESPTSPLLLQGQEHSSVTVLKGQRPKCYDQALKPISIKDTCPDTKEGAPDSALATKNRRRSCSWGIIWNKKSEDTGVDFRLKNILLKGSIGAPGLQPVCHLCRKPYRSDLMYVCCETCKNWYHADALELDESKICEVSGFKCCKCRRIKSPECPYSDKKPKMQGSTKKHRRPSKKDNSSTGHFGVISEPQEFEPATPNFPMGDDGLRHDNDPLLYSLSSAELITDPNAEANAVSGLGLGKLPVRRHIKREGDGDESFGTKLSQAEILTHNGTGSLSAVEKASSPVEYDPAVCFDSNLLNDCGNETYEFMDFEPHTYFSVTELLQPDDNHFEGADGSGDLSGYLENVSTANIDGIPEESGALCLVDKLEPAAYIPGSGYHCCKCLQMEPAPDLCCDICGIWIHSQCSPWVESPSRLGSWRCGNCREWQ 1660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0398 1660 CDD PHD_SF 1331 1378 - -
Alju10g0398 1660 ProSitePatterns Zinc finger PHD-type signature. 424 465 IPR019786 -
Alju10g0398 1660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 481 IPR013083 -
Alju10g0398 1660 SMART testlast3 200 260 IPR018501 -
Alju10g0398 1660 ProSiteProfiles Zinc finger PHD-type profile. 421 468 IPR019787 -
Alju10g0398 1660 CDD PHD_SF 1612 1656 - -
Alju10g0398 1660 SUPERFAMILY FYVE/PHD zinc finger 1329 1384 IPR011011 -
Alju10g0398 1660 ProSiteProfiles DDT domain profile. 200 260 IPR018501 -
Alju10g0398 1660 MobiDBLite consensus disorder prediction 15 32 - -
Alju10g0398 1660 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 304 353 IPR028942 -
Alju10g0398 1660 CDD Tudor_AtPTM-like 47 95 IPR047365 -
Alju10g0398 1660 SMART PHD_3 1612 1657 IPR001965 -
Alju10g0398 1660 SMART PHD_3 423 466 IPR001965 -
Alju10g0398 1660 SMART PHD_3 1173 1222 IPR001965 -
Alju10g0398 1660 SMART PHD_3 1331 1379 IPR001965 -
Alju10g0398 1660 Pfam PHD-finger 424 466 IPR019787 -
Alju10g0398 1660 SUPERFAMILY FYVE/PHD zinc finger 1607 1658 IPR011011 -
Alju10g0398 1660 SUPERFAMILY FYVE/PHD zinc finger 401 466 IPR011011 -
Alju10g0398 1660 Pfam DDT domain 203 257 IPR018501 -
Alju10g0398 1660 MobiDBLite consensus disorder prediction 143 186 - -
Alju10g0398 1660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1324 1396 IPR013083 -
Alju10g0398 1660 PANTHER PHD FINGER FAMILY PROTEIN 42 1413 - -
Alju10g0398 1660 MobiDBLite consensus disorder prediction 1388 1438 - -
Alju10g0398 1660 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0398 Alju-ChrAlju10 3164107 3170831 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0398 290 605 EF-hand Containing Proteins AT5G22760 43.202 9.49e-71 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Alju10g0398 DDT 5.1e-14 No_clan