LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju10g0391	ATGGCGGAGGATCGGAACGGTGATAGCAATGAGTTAAGTGATTATAGTTCGGAGGACGAAGGGACTGAGGACTACAGACGAGGAGGTTATCATGCCGTTCAAATTGGTGACACTTTCAAAAATGGGTGCTATGTGGTGCAAAGCAAACTCGGCTGGGGTCATTTTTCTACTGTGTGGCTCGCTTGGGATACCCAGAGATCGCGTTATGTAGCCCTAAAAATTCAGAAGAGTGCCCAGCACTACACTGAAGCTGCAATGGATGAAATAAAGATTCTCAAACAGATTGCTGAAGGGGACCCGGATGACAAGAAATGTGTCGTCAAGCTTTTAGATCACTTTAAGCATTCAGGACCCAATGGCCACCACGTGTGTTTGGTTTTCGAATTCTTGGGTGACAATCTTCTGACCGTTATTAAGTATAGTGATTACCGAGGGATTCCTATCTCAATGGTTAAAGAAATTTGTTTCCATATTCTGGTGGGGTTGGATTACTTGCATCGCGAACTATCTATAATACACACAGATTTGAAGCCAGAGAATGTCTTGCTTTTGTCAACGATGGATCCATCCAAAGATCCTAGAAAATCTGGTGCCCCACTTATCCTTCCAAATACCAAGAATAAGACCATTTCAAAAAGTGGCGCCACAAAAGACAGTAATAGTTCAAAAGGGGATCTGACCAGGAACCAGAAAAAGAAATTGCGGAAAAAGGCTAAAAAGGCTGCTCAAAGTTGTGTTGAGAAGGAGATTCCCAAGGAAGACGGGGAGGATTCTAAACCACCTGAAGTAAAAGATTGTGGTGATTATGTGAAAAAGATTGTGGAATCTGAAGACAAACCTAGTAGTCTTGTAACCAAAGAGGAACCAATTGAAGTTGTTGAAACCGAGGACATCCCAAAAGGTAGTCATGGTCAACTGAGAGTTAGTCGTTCCATGAAGAAGAAGTTGCTTGCCGCTGTTGATCTTAAATGCAGGCTGGTTGATTTTGGAAATGCTTGTTGGACTTATAAACAATTCACGAATGATATTCAGACAAGGCAGTATAGGTGTCCTGAGGTTATTCTCGGATGCAAATACTCGACTGCAGTTGATCTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTTCCACTGGAGATGTTCTTTTTGATCCCCACAGTGGAGACAACTATTCAAAGGATGAGGATCATTTGGCATTGATGATGGAACTTCTTGGATCGATGCCTCGGAAGATTGCTCTAGGCGGTTGCTATTCTCAGGAGTTTTTTAACAGATATGGTGATTTAAGGCACATCCGCCGGTTACGTTTCTGGCCTCTTAACAAGGTACTGATGGAGAAGTATGACTTTAGTGAGCAAGATGCAAATGACATGGCCGACTTCCTTGTTCCCCTCTTTGATTTTGCCCCCGAAAAGAGGCCAACAGCTGCCCAGTGCCTCAATCATGCATGGATCTCTGCAGGTCCTCGGACTCTCGAGCCCTCAGTGACTACTGTCCAGTCTGTGGCAACAGACAAGGTAATGTCTGAAAAGATGAAGGAAAAGGCTGAGTTGGAGGCAGTTGAAGTTGGTGTGCGGACTATAACCATTCATGGATCTCCAAAGGCACTCACTGATTCACAGGCTACACATAGTTAG	1635	0.4391	MAEDRNGDSNELSDYSSEDEGTEDYRRGGYHAVQIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTQRSRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGHHVCLVFEFLGDNLLTVIKYSDYRGIPISMVKEICFHILVGLDYLHRELSIIHTDLKPENVLLLSTMDPSKDPRKSGAPLILPNTKNKTISKSGATKDSNSSKGDLTRNQKKKLRKKAKKAAQSCVEKEIPKEDGEDSKPPEVKDCGDYVKKIVESEDKPSSLVTKEEPIEVVETEDIPKGSHGQLRVSRSMKKKLLAAVDLKCRLVDFGNACWTYKQFTNDIQTRQYRCPEVILGCKYSTAVDLWSFACICFELSTGDVLFDPHSGDNYSKDEDHLALMMELLGSMPRKIALGGCYSQEFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEQDANDMADFLVPLFDFAPEKRPTAAQCLNHAWISAGPRTLEPSVTTVQSVATDKVMSEKMKEKAELEAVEVGVRTITIHGSPKALTDSQATHS	544

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju10g0391	544	Gene3D	Phosphorylase Kinase; domain 1	20	126	-	-
	Alju10g0391	544	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	171	183	IPR008271	GO:0004672\|GO:0006468
	Alju10g0391	544	MobiDBLite	consensus disorder prediction	1	23	-	-
	Alju10g0391	544	Pfam	Protein kinase domain	321	484	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju10g0391	544	Pfam	Protein kinase domain	44	184	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju10g0391	544	MobiDBLite	consensus disorder prediction	187	262	-	-
	Alju10g0391	544	MobiDBLite	consensus disorder prediction	202	223	-	-
	Alju10g0391	544	FunFam	CMGC/SRPK protein kinase	30	129	-	-
	Alju10g0391	544	SUPERFAMILY	Protein kinase-like (PK-like)	39	497	IPR011009	-
	Alju10g0391	544	ProSitePatterns	Protein kinases ATP-binding region signature.	50	73	IPR017441	GO:0005524
	Alju10g0391	544	ProSiteProfiles	Protein kinase domain profile.	44	484	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju10g0391	544	CDD	STKc_SRPK	33	484	-	-
	Alju10g0391	544	PANTHER	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED	13	504	-	-
	Alju10g0391	544	Gene3D	Transferase(Phosphotransferase) domain 1	127	485	-	-
	Alju10g0391	544	SMART	serkin_6	44	484	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju10g0391	544	FunFam	Serine/threonine-protein kinase SRPK-like protein	314	484	-	-
	Alju10g0391	544	MobiDBLite	consensus disorder prediction	240	262	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju10g0391	Alju-ChrAlju10	3129590	3133078	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju10g0391	1	544	EF-hand Containing Proteins	AT5G22840	64.610	0.0	707

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_SRPK	Alju10g0391		Pkinase	2e-19	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Alju02g0274	02	2091527	2094015	Alju10g0391	10	3129590	3133078	CCT