Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju10g0381 | ATGGAACTCTACAACCGGAGACTGCTCCTACTGAACGAAGATGAACCCTCCTACTCCGACGCCGCCTCTTCTTCACCACCGCGGTTAACGACGACGCCACTTTCGTCTTCACTGTTCGTTACACCTTTGAAACTATCAGCACCTGTAGCCTTTAATTCTGACGTTGCTTACCTCATCATCATCGTCCTCCTCTTAATAGCTTTCATCATTCTGTTCATCCGGAGTTTCACCGACCACTCCCCTGCATCCGGCCGTCACGCGCCACCGGCGTCTTCTAATTATCATTCTCCGTCGTCATCCTCGTGCGGTGGTGGTCTCGACCCCACCACCGTCCAATCCCTGCCGGTGTTTCGGTACAACTCAGAAGCAAAGCACCAGGACGACTGTGCCATTTGCCTAAGTGAATTCGAGATCGGTGAGACCGTTAAGATAGTTCCGGACTGTAAGCACGTGTTCCACCGGGAATGCATCGACACGTGGCTGTCCTCGCATGTGACGTGCCCGATATGCCAGGGAAGCAACTTTTTTGCGGTGGAACGGCAGGCAGAATCGGCTAAGGTGGAGCCGACCAGCGATCAGAGTCTTGGCCCTCTATCGGTAGCATCGACGGTCGAGAATGGTGACACGTGGCGAGAAGGTAGAACGATGGGAACATTATCTAATCAGAGACGGAGCCGGAGTGGCTCGAGCTTTAGAGATACCCTAACTTTACGAAGAACATTAAGCTACTGA | 732 | 0.5287 | MELYNRRLLLLNEDEPSYSDAASSSPPRLTTTPLSSSLFVTPLKLSAPVAFNSDVAYLIIIVLLLIAFIILFIRSFTDHSPASGRHAPPASSNYHSPSSSSCGGGLDPTTVQSLPVFRYNSEAKHQDDCAICLSEFEIGETVKIVPDCKHVFHRECIDTWLSSHVTCPICQGSNFFAVERQAESAKVEPTSDQSLGPLSVASTVENGDTWREGRTMGTLSNQRRSRSGSSFRDTLTLRRTLSY | 243 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju10g0381 | 243 | MobiDBLite | consensus disorder prediction | 187 | 231 | - | - | |
| Alju10g0381 | 243 | FunFam | E3 ubiquitin-protein ligase ATL6 | 95 | 175 | - | - | |
| Alju10g0381 | 243 | CDD | RING-H2_EL5-like | 128 | 170 | - | - | |
| Alju10g0381 | 243 | MobiDBLite | consensus disorder prediction | 86 | 104 | - | - | |
| Alju10g0381 | 243 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 94 | 174 | IPR013083 | - | |
| Alju10g0381 | 243 | SMART | ring_2 | 129 | 170 | IPR001841 | - | |
| Alju10g0381 | 243 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 35 | 172 | - | - | |
| Alju10g0381 | 243 | Pfam | Ring finger domain | 127 | 171 | IPR001841 | - | |
| Alju10g0381 | 243 | ProSiteProfiles | Zinc finger RING-type profile. | 129 | 171 | IPR001841 | - | |
| Alju10g0381 | 243 | MobiDBLite | consensus disorder prediction | 84 | 104 | - | - | |
| Alju10g0381 | 243 | MobiDBLite | consensus disorder prediction | 186 | 231 | - | - | |
| Alju10g0381 | 243 | SUPERFAMILY | RING/U-box | 110 | 178 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju10g0381 | Alju-ChrAlju10 | 3043883 | 3044614 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju10g0381 | 57 | 177 | C3H Transcription Factor Family | AT2G27940 | 41.045 | 4.46e-30 | 110 |