Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0371 ATGGACATGGACGCCACCACTGAGCAGCTTGTGGGGTCGACCAAAGGCAAACGCACCAAACGCCACAGGCCTTTCTCCGCCACTCTCACCCATTCCACCTCCTCCTCTGCTTCCGTCGATGATTACGCCACCTCCTTCAATTCCTCCGCCTCCACCGCTTTTGACGCCGCCGCCGATGATGAAGAAGAAGACATGGCTAAGTGCTTGATTCTCTTGGCTCAGAGTGCTGATGCTCCTCACAAGGAGCCTCCTACCACCACCAAGAATATCAGTGGCTTCTATGTTTACGAGTGCAAAACTTGTAACAAGTCCTTCCCTTCCTTTCAAGCCTTAGGTGGACACAGAGCAAGCCACAAGAAACCTAAGGTGGAGCCCCCATCACAACCACTCGCCGCCGCACAAGTTACGGCTTTTGAGGTTGAAGAAGCAGGGGAAGATCAGTTCAAAAGCACCTCTCAGATTTCTCTTCAATTAGCTAGCAGAAAGGCTTTCCATAGCAACAAGGCCAAGATTCATGAGTGTTCGATATGTGGGTCCGAGTTTACGTCTGGTCAAGCATTGGGTGGCCACATGAGGAGGCACAGGGCATCGGCCAACACCACCGCCGCGGAAGTGAAGCCCAGGAATGTTCTCGAATTGGATCTCAATTTGCCGGCGCCGGAGGACGATCTCCGGGATTCCAAGTTTCAGTTCACACCCGGGCCGAAATCTCTGGTGCTGTCTTCTCCGGCTTTGGTGGACTGCCATTACTGA 753 0.5325 MDMDATTEQLVGSTKGKRTKRHRPFSATLTHSTSSSASVDDYATSFNSSASTAFDAAADDEEEDMAKCLILLAQSADAPHKEPPTTTKNISGFYVYECKTCNKSFPSFQALGGHRASHKKPKVEPPSQPLAAAQVTAFEVEEAGEDQFKSTSQISLQLASRKAFHSNKAKIHECSICGSEFTSGQALGGHMRRHRASANTTAAEVKPRNVLELDLNLPAPEDDLRDSKFQFTPGPKSLVLSSPALVDCHY 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0371 250 ProSitePatterns Zinc finger C2H2 type domain signature. 174 194 IPR013087 -
Alju10g0371 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 172 199 IPR013087 -
Alju10g0371 250 SMART c2h2final6 172 194 IPR013087 -
Alju10g0371 250 SMART c2h2final6 96 118 IPR013087 -
Alju10g0371 250 MobiDBLite consensus disorder prediction 26 41 - -
Alju10g0371 250 Pfam C2H2-type zinc finger 172 196 - -
Alju10g0371 250 Pfam C2H2-type zinc finger 95 121 - -
Alju10g0371 250 SUPERFAMILY beta-beta-alpha zinc fingers 95 194 IPR036236 -
Alju10g0371 250 Gene3D Classic Zinc Finger 93 194 - -
Alju10g0371 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Alju10g0371 250 PANTHER ZINC FINGER PROTEIN ZAT5 49 231 - -
Alju10g0371 250 MobiDBLite consensus disorder prediction 1 41 - -
Alju10g0371 250 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0371 Alju-ChrAlju10 2974082 2974834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0371 15 250 C2H2 Transcription Factor Family AT2G28200 44.912 3.89e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju10g0371 zf-C2H2_6 1.6e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0256 02 1943917 1944873 Alju10g0371 10 2974082 2974834 CCT
Alju02g0256 02 1943917 1944873 Alju10g0371 10 2974082 2974834 ECH
Alju10g0371 10 2974082 2974834 Alju10g0371 10 2974082 2974834 ECH