Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0370 ATGGAATTGGAACCCCACTTGCTCCTTCCCTCCCTCCCTCAATCCTCTGTCTCCGATTCCTCTATTCAGCATTACGGCTGCAAACATTACAGAAGGAGGTGTAAGATCAGAGCGCCCTGTTGCAATGAAGTTTTTGACTGTCGCCATTGCCATAATGAAGCTAAGAACTCCCAAGACATCAATCTCATCGATCGTCACGATATACCCCGCCACGACATTACGAAGGTCATCTGTTCCTCATGTGAAACAGAACAGGATGTTCAACAATATTGCATCAACTGTGGAATCTGCATGGGGGAGTACTTTTGTGCTACTTGCAAATTCTTCGACGATGATACCTCGAAGAACCAATACCACTGTGATGAATGTGGCATCTGCAGAACTGGAGGCAAGGATAACTTCTTCCACTGTAAGAAATGTGGTTGTTGTTACTCCAATGTGATGAAAGAAGGACACCGATGTGTAGAACGAGCAATGCATCACAATTGCCCTGTTTGTATTGAGTATCTATTTGATACCCTGAAAGATATCACTGTCTTGCATTGCGGCCATACCATACATTTGGAGTGTCTCCGAGAGATGGGAAAACATTGCGGGTATTCATGCCCTGTTTGCTCAAAATCCATCTATGACATGTCAAGTGCATGGAAGAAGCTTGACCAAGTGATCGCTTCGACACCAATGCCTGAAGCTTACAAAGACAAGATGGTATGGATACTGTGCAATGATTGTGGAGTGAACTCTCAAGTGCATTTCCACGTGGTGGCTCATAAGTGTCAGAGTTGCAACTCATACAACACAAGACAGATACAGGGAATCCCTACCACCGCATGCACTTCTTCGGTGACTGGGGTGGTGAAATGA 864 0.4514 MELEPHLLLPSLPQSSVSDSSIQHYGCKHYRRRCKIRAPCCNEVFDCRHCHNEAKNSQDINLIDRHDIPRHDITKVICSSCETEQDVQQYCINCGICMGEYFCATCKFFDDDTSKNQYHCDECGICRTGGKDNFFHCKKCGCCYSNVMKEGHRCVERAMHHNCPVCIEYLFDTLKDITVLHCGHTIHLECLREMGKHCGYSCPVCSKSIYDMSSAWKKLDQVIASTPMPEAYKDKMVWILCNDCGVNSQVHFHVVAHKCQSCNSYNTRQIQGIPTTACTSSVTGVVK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0370 287 Pfam CHY zinc finger 27 108 IPR008913 GO:0008270
Alju10g0370 287 Gene3D - 236 276 - -
Alju10g0370 287 SMART ring_2 163 205 IPR001841 -
Alju10g0370 287 Pfam Zinc-ribbon 211 268 IPR039512 -
Alju10g0370 287 ProSiteProfiles Zinc finger RING-type profile. 163 206 IPR001841 -
Alju10g0370 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 235 IPR013083 -
Alju10g0370 287 SUPERFAMILY RING/U-box 161 209 - -
Alju10g0370 287 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 22 271 - -
Alju10g0370 287 SUPERFAMILY CHY zinc finger-like 23 97 IPR037274 GO:0008270
Alju10g0370 287 FunFam RING finger and CHY zinc finger domain-containing protein 1 234 277 - -
Alju10g0370 287 ProSiteProfiles Zinc finger CTCHY-type profile. 98 162 IPR017921 -
Alju10g0370 287 ProSiteProfiles Zinc finger CHY-type profile. 20 96 IPR008913 GO:0008270
Alju10g0370 287 SUPERFAMILY Zinc hairpin stack 99 156 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0370 Alju-ChrAlju10 2956693 2958788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0370 16 281 C2H2 Transcription Factor Family AT3G18290 39.273 1.31e-55 191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju10g0370 10 2956693 2958788 Alju10g0370 10 2956693 2958788 ECH