Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0309 ATGAAGGATTCTTGGTTTTTTGACAAGAATTTTAATGGTTTGTCGGATGAAATTTTTGATGATGTCATCAAATATTTTGACTTCCCGGTGGAAGATGTGGAACCTAATGCCATAGATGAAGATTGGGATGCCCAATTCAAACACCTTGAAGAGCCATATTTTGATGTTCCCTCTGTGTCACCTTCTGGGTTGTGTGATAAGACTCGAAAAGGCAATCCAAAACCTGAGGGGATCTCTACTTCTCGTGCTGAGATTTGCCCAATGGAACAAGTGCCGGAGACTACTAAGGTGACATATATCAAAACCATTCCCAATCCAAGAGTCTCTTCCAACGGCAAGGATTTCCTCCAATTCCAAATTTACAGCCCAGTCTCTGTTTTTGAAAGCAGTAGTTCTTCGTCAGGTGAGAATGCCTTTGATCGGCCTGCCATCCGAAAGCGAGCTCGCAGCAAACGCCGCCCTCTCTCAAGCCTCAGCCCTCTTTTCTCAGTTCCTTTCATCTCTTCTTCACAAGCTTGCCAAAAACCTCAAAAGGCAGCCGCTGCCAAATCGAATTTTGAAGCTCTCCTTACTTGGGATTGGGTACCATGCTATGGTCCCAATGAGAAGCAGACGAAGAAAGCTCTCTCTGTTCCCTCTAGTCGTATTAATATGAAGGGAGCATCATGGAAGCAGTCAATCATCCACAGAAAATGCATGCATTGTCAGGTTACAAAGACCCCTCAGTGGAGGGAGGGTCCTATGGGCCCAAAAACCCTATGCAATGCATGTGGGGTTCGATACCGGTCCGGCCGCCTCTATCCCGAATACCGGCCAGCCGCAAGTCCAACTTATGTAGCATCATTGCACTCTAACTGTCACAAGAAGGTCTTAGAGTTGAGAAACAGAGCTATAAGTGAAGCTGATGAAGGTTCTATGTTGCCTTTGTCTTCGGAACCTTCAAGAAATTCACGAGGATAA 960 0.4562 MKDSWFFDKNFNGLSDEIFDDVIKYFDFPVEDVEPNAIDEDWDAQFKHLEEPYFDVPSVSPSGLCDKTRKGNPKPEGISTSRAEICPMEQVPETTKVTYIKTIPNPRVSSNGKDFLQFQIYSPVSVFESSSSSSGENAFDRPAIRKRARSKRRPLSSLSPLFSVPFISSSQACQKPQKAAAAKSNFEALLTWDWVPCYGPNEKQTKKALSVPSSRINMKGASWKQSIIHRKCMHCQVTKTPQWREGPMGPKTLCNACGVRYRSGRLYPEYRPAASPTYVASLHSNCHKKVLELRNRAISEADEGSMLPLSSEPSRNSRG 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0309 319 SMART GATA_3 226 276 IPR000679 GO:0006355|GO:0043565
Alju10g0309 319 ProSitePatterns GATA-type zinc finger domain. 232 257 IPR000679 GO:0006355|GO:0043565
Alju10g0309 319 Pfam GATA zinc finger 232 265 IPR000679 GO:0006355|GO:0043565
Alju10g0309 319 Gene3D - 227 277 IPR013088 GO:0006355|GO:0008270
Alju10g0309 319 ProSiteProfiles GATA-type zinc finger domain profile. 230 262 IPR000679 GO:0006355|GO:0043565
Alju10g0309 319 CDD ZnF_GATA 231 278 IPR000679 GO:0006355|GO:0043565
Alju10g0309 319 PANTHER GATA TRANSCRIPTION FACTOR 40 301 - -
Alju10g0309 319 FunFam GATA transcription factor 222 306 - -
Alju10g0309 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 229 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0309 Alju-ChrAlju10 2374278 2376540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0309 8 307 C2C2-Gata Transcription Factor Family AT1G08010 37.013 1.02e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Alju10g0309 GATA 5.1e-16 CL0167