Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0307 ATGAAGGAAGAAGCTGAGAAAAGCTTGGATCCACAACTATGGCACGCTTGTGCCGGCGGTATGGTTCAGGTGCCGTCTCTGAACTCCAAAGTTTTCTACTTTCCTCAAGGACACGCCGAGCACGCTCAGGCCGGCGTCGACTTCGCGGCGGCCTCCTTGAGGATTCCACCACTCGTTCTCTGCCGCGTGGCAGCCGTGAAATTCCTGGCCGACCCAGAAACCGACGAGGTCTTTGCCAAGATCAAGTTGATTCCTTTGAGAAACTCCGAGCTAGATGATGCCGACGGCGACGAAAACACTCACGGCTCTGAGAATTCCGAGAAGCCCGCGTCTTTCGCCAAGACCTTAACCCAGTCCGATGCTAACAATGGTGGAGGCTTCTCTGTTCCGAGATACTGCGCAGAGACCATATTCCCACGGCTCGATTACTCGGCTGAGCCGCCGGTTCAAACCGTGATTGCGAAGGACGTCCACGGCGAAATTTGGAAGTTCAGGCATATCTACAGAGGGACACCTCGCCGTCACTTGCTGACAACAGGGTGGAGTACTTTCGTTAACCAGAAGAAACTCGTAGCAGGGGACTCTGTTGTGTTCCTGAGGGCCGAAAATGGCGATCTCTGTGTCGGGATTCGCCGTGCAAAGCGTGGGATCGGCGTCGGATCCGACGGCATCTCCGGTTGGAGCTCCGGCACCGGAGGGAACTGTGTGGGGCCTTATGGGGCTCTCAGTGTGTTGCTCAGAGAAGAAACCAAGCTTCTCCGAAACAATTCAAATGTTGGGAATTCAAATCCTGGGAGAGGCCGAGTGAGACCAGAATCTGTGATGGAAGCTGTAACGCTTGCTGCTAATGGTCAAGCATTTGAGGTTGTTTATTACCCAAGAGCAAGTACTCCTGAGTTTTGTGTGAAAGCTGAGGCTGTTAAAGCAGCCATGAGAATTCAATGGTGTTCTGGGATGAGGTTTAAGATGGCCTTTGAGACAGAGGATTCTTCCAGGATTAGCTGGTTCATGGGCACTGTTGCTTCTGTTCAAGTTGTTGATCCTATTCGCTGGCCCAATTCTCCTTGGAGACTTCTTCAGGTTAGTTGGGATGAGCCAGATTTGTTACAGAATGTGAAGAGGGTAAGTCCATGGTTGGTTGAACTGGTATCGAACAGGCCGGTGATTCCTCTCATGCCATTCTCTCCTCCTCGGAAGAAGATGCGCCTTTCTCAACACCCAGACTTCCCCTTTGATGGTCCCTTTACGATACCGACATTTCCCGGTGGCAACCCCCTTGGGCCCAGCAGCCCCTTGTGTTGTCTTCCCGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTCGGAATATCTCTTTCAGATCTCCACCTAAACAATAAGTTGCAGTTGGGGCTGCTTTCAAATAATAACATCCAGCAGCTTGATGTGCATCATCATCATCATCCTGGGATTTCTAATGGCAACATAATGATGAGCCATGACAAGAAAAATGAGAGCTTGTCATGCTTGCTTACCATGGGAAATTCTAACAAGAGTTTGGAGAAATCTGATGATGTTGTTGTCAAGAGACACCAGTTTCTGCTTTTTGGACAGCCAATTCTGACTGAGCAACAAATTTCTCAAAGCTGTCATGCTGAAGTGTGGTCTCAGAACTTTTCATGTAAGAATTCACCAGATGAATGTAAGGATAAGGCAAAGAGCTTCTTTGGTGTATCCCAATCCGCAGTTTCGCAGCCGGGATTGTCTTCTACAACCGACTTCTCTTGGCAACTTGGCTTGGATACAGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGACGTGGGGCGCACTCTAGACCTTTCATGTCTCAGCTCTTATGAAGAGCTGTACCAGAAACTGGCTAACATGTTCGGACTTGAAAGATCTGAGATGTTGAGCCGTGTGCTTTACCGAGATGCTTCTGGTGCCGTCAAACGAACCGGAGAAGAACCCTTCAGCGACTTCATGAAAACAGCAAAAAGATTGACAATTCTGACAGATTCGGGCAGCAAAGATATTAGAAGGGCGTGGATGACAGGATCTCGAAATGGAGATCATGGACTGGATGCATCAAACAAGACAGGCTTTCTGAGCATATTTGCCTAA 2133 0.4937 MKEEAEKSLDPQLWHACAGGMVQVPSLNSKVFYFPQGHAEHAQAGVDFAAASLRIPPLVLCRVAAVKFLADPETDEVFAKIKLIPLRNSELDDADGDENTHGSENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKRGIGVGSDGISGWSSGTGGNCVGPYGALSVLLREETKLLRNNSNVGNSNPGRGRVRPESVMEAVTLAANGQAFEVVYYPRASTPEFCVKAEAVKAAMRIQWCSGMRFKMAFETEDSSRISWFMGTVASVQVVDPIRWPNSPWRLLQVSWDEPDLLQNVKRVSPWLVELVSNRPVIPLMPFSPPRKKMRLSQHPDFPFDGPFTIPTFPGGNPLGPSSPLCCLPDNAPAGIQGARHAQFGISLSDLHLNNKLQLGLLSNNNIQQLDVHHHHHPGISNGNIMMSHDKKNESLSCLLTMGNSNKSLEKSDDVVVKRHQFLLFGQPILTEQQISQSCHAEVWSQNFSCKNSPDECKDKAKSFFGVSQSAVSQPGLSSTTDFSWQLGLDTGHCKVFLESEDVGRTLDLSCLSSYEELYQKLANMFGLERSEMLSRVLYRDASGAVKRTGEEPFSDFMKTAKRLTILTDSGSKDIRRAWMTGSRNGDHGLDASNKTGFLSIFA 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0307 710 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Alju10g0307 710 FunFam Auxin response factor 110 214 - -
Alju10g0307 710 Pfam Auxin response factor 277 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Alju10g0307 710 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Alju10g0307 710 Gene3D - 315 387 - -
Alju10g0307 710 MobiDBLite consensus disorder prediction 90 104 - -
Alju10g0307 710 SMART B3_2 112 214 IPR003340 GO:0003677
Alju10g0307 710 MobiDBLite consensus disorder prediction 90 109 - -
Alju10g0307 710 SUPERFAMILY DNA-binding pseudobarrel domain 105 215 IPR015300 -
Alju10g0307 710 CDD B3_DNA 111 212 IPR003340 GO:0003677
Alju10g0307 710 ProSiteProfiles PB1 domain profile. 598 678 IPR000270 GO:0005515
Alju10g0307 710 Gene3D - 110 214 IPR015300 -
Alju10g0307 710 FunFam Auxin response factor 315 388 - -
Alju10g0307 710 Gene3D - 597 682 - -
Alju10g0307 710 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 677 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0307 Alju-ChrAlju10 2355247 2358351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0307 1 682 B3 DNA Binding Superfamily AT4G30080 59.629 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Alju10g0307 B3 1.8e-21 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0203 02 1566635 1569450 Alju10g0307 10 2355247 2358351 CCT