Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0295 ATGGGCTCGAAGATCGCTTGTGGTGGGGAACAAAAGATCGTCGACAGTGGGGAAAAGAATGGGTTGTTGTGCTTTGAGCTTGGAACACATGAGGATGAAGGAGAACATCAGATCATAGTGAGAAAAGAGGGACTAGATTTGAAAAGAGTACCCCCGTCTTTCACACTAAGACTAAAACATTATCGAGTGCAGACTTATTTGTGGGAGGAAGCATTCAGTCTAAAGCTCGCCCACTCTGTAGCCATGCCGCCCAAGTTGGATCCCTCTCAGATCGTCGATGTGTTTGTTCGTGTCACTGGAGGCGAGGTAGGTGCGGCCAGTTCACTCGCCCCTAAGATCGGTCCCCTCGGTCTCTCTCCGAAGAAGATTGGTGAAGACATAGCGAAGGAGACTGCTAAGGACTGGAAGGGATTGAGAGTCACTGTTAAGCTTACGGTCCAGAACCGTCAGGCTAAGGTGTCCGTGGTGCCATCGGCTGCTGCGCTTGTTATAAAGGCTTTGAAAGAGCCCGAGCGAGACCGCAAGAAGACTAAGAATATTAAGCACAATGGCAACATATCCCTCGATGATGTGATTGAGATTGCAAGAACTATGAGGCCGAGATCGATGGCTAAGGACCTTTCTGGCACTATAAAGGAGATCCTTGGTACTTGCGTCTCTGTTGGTTGCACTGTTGACGGGAAGGACCCCAAGGACTTACAGCAGGAAATCACTGACGGAGATGTTGAAGTCCCTCTGGAATGA 744 0.4946 MGSKIACGGEQKIVDSGEKNGLLCFELGTHEDEGEHQIIVRKEGLDLKRVPPSFTLRLKHYRVQTYLWEEAFSLKLAHSVAMPPKLDPSQIVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARTMRPRSMAKDLSGTIKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEVPLE 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0295 247 CDD Ribosomal_L11 94 225 IPR000911 GO:0003735|GO:0005840|GO:0006412
Alju10g0295 247 Gene3D - 77 162 IPR036796 -
Alju10g0295 247 FunFam 60S ribosomal protein L12 82 162 - -
Alju10g0295 247 Hamap 50S ribosomal protein L11 [rplK]. 90 227 IPR000911 GO:0003735|GO:0005840|GO:0006412
Alju10g0295 247 FunFam 60S ribosomal protein L12 163 245 - -
Alju10g0295 247 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 80 168 IPR036796 -
Alju10g0295 247 SUPERFAMILY Ribosomal protein L11, C-terminal domain 157 230 IPR036769 -
Alju10g0295 247 Gene3D - 163 245 IPR036769 -
Alju10g0295 247 Pfam Ribosomal protein L11, RNA binding domain 156 225 IPR020783 GO:0003735|GO:0005840|GO:0006412
Alju10g0295 247 PANTHER 60S RIBOSOMAL PROTEIN L12 82 232 IPR000911 GO:0003735|GO:0005840|GO:0006412
Alju10g0295 247 ProSitePatterns Ribosomal protein L11 signature. 212 227 IPR020785 GO:0003735|GO:0005840|GO:0006412
Alju10g0295 247 Pfam Ribosomal protein L11, N-terminal domain 96 150 IPR020784 -
Alju10g0295 247 SMART rl11c 94 226 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0295 Alju-ChrAlju10 2268043 2270214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0295 82 245 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 90.244 1.08e-106 303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju10g0295 10 2268043 2270214 Alju10g0295 10 2268043 2270214 ECH