Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0284 ATGGCGGAAACTGGAAATACTGAACTTTCACTTTCACCCTCTAAAACCCTAAACCCTTCTGATCCAATCAACGGTTCTCACTCGCCCCAATCGCCCGCTGAAAACGCTCAAATCCATCAGGAATCTTCGTCTCCCGCTCCCCAGCCTTCCGACGACGTCGTCTCGGGCGAGAAACGGAAGCGAGAGGACTCAGACACGGGGGTGTCAGATCCTTCCCTCAACCCCTTGTTGAAAACTAGCCTCTGTTCTTATTTCCGGCGACACGATGGCTCCTGCAGCCACGGGAGTGAGTGCCGCTATGCCCATGGTGAAGAGGAGCTTCGGCCTCGGCCCGATAACACCTGGGACCCTACGTCTGAGCGGGCGAAGAAGGTGATGAAATCCGAGACCGGTGATAAATGTGCAGTTTCCATGGGTGTAATGATGACTGAGGCTGTGGTCGATGATGCTGATGGCGAGGACAATGATAATTCCAATCACGCTCTTAGCAAATGCTTGGTGCATTTGCCGAGGAAGTGGGGTTCGGACAACTTGAGGGGATTTCTCAATCAAGAGGGTATACCTTTTAAATCTGCAAAGAAAAAGAAAGGCATGCTGGTAGGATTTGTCACTTTTGAAGATCAGGAACAGTTGAAGAGCTCAACAAAGGAGCTGGAAGGCAAATTAATTGGCAGCAGAAGTTTAAAAGTTGCAGATGTCATTCCTCGATCATTTGAAAAGAAATCAAATGTTACTCTTTGTGTAGATTCTGCACAAAATGCAGATGCTGCATTAGCTAAGGAGAATACAGATGAGAATGTGGATAGTGAGACAAATGGTGCAAATTTGGTGGTTGGTGATTCCATGCCGAAGACAAGAAGCCTCCGAGACGTAGTGACTCCTCTTGCTCATATGGCCTATGCTGATCAGTTAGAGCACAAAAAAGGCTCTCTCACACAGATCCTCAAAAGACTTACTAGAAATGCTCGCAAAGCTTGTCCAAGTGGCGTTTCTCTTCCTGAGTGGATTCTCAAGTCTAGGGACATAGGCGGCCTTCCTTGCAAACTAGAAGGTATTATTGGATCGCCAAGGGTAAATGGATATCGCAACAAGTGTGAATTTTCTGTTGGATATTCTGTAGAAGGAAAAGTAACAGTAGGATTCATGCTAGGAAATTTCAGGGAGGGTGTAACAGCAGTTGAGGAAGCTGGGGACTGCCCCAATGTTTCAACAATTGCTCTCCAGTATGCTTCTATCCTTCGGGAATTTCTGCAGCAGTCACAGTTACCAGTCTGGAACAGATTTAAGAATAGCGGGTTTTGGCGTCAATTGACAGTTCGAGAAGGAAGGACAGATGGGAAGGTTGCTGATGCTGAAGATTTTGGTGGTATTGTAGAGGTCATGCTTATTGTGCAGGTTTCTACAAAGGGCTTTGATAATGAGCTAGTAACCGGTGAGTTTGAGAAACTTGCTCAAGCATTTGTTGCAGGAGCTAATGCATGTTCTCCATCATCGCCTCTCACGGCTCTGGTTGTACAGGATCACCAAGGAATATCCAATGTAGCACCAGCTGATGCCCCCCTGCGGTCACTTCTCACTCCTAAAGCAGTCGGTGATCAAATAAGTGAAAATGATGCCATGGATTTTAGGATCCATGATTATATCAGCAATCTCAAGTTTTCAATATCTCCGACTGCATTTTTCCAGGTCAACACTCTAGCTGCTGAGAAGTTGTACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACGTTGCTATTTGATATATGCTGTGGGACAGGAACAATTGGCCTGACCTTAGCACATCGTGTTGGTATGGTGATTGGTGTTGAAATGAATGCTTCTGCAGTATCTGATGCTCAAAGGAACGCTGAGATTAACGGTATAAAGAATTGTAGATTTATATGTGCAAAGGCCGAGGATGTGATGGGATCGTTGTTAAAGGAGCACCTAAATAAGCCTAATGAACAAGTTAATGTTCCTAGTATCTGTGGAACTGATGTTGAGGAAATTTCCGAGGGGAGTACATGCCCTGAAACTGAAAATGGTGAACAAGAATCTCAGTGTTCTGAAAATGGCAGGCAAGAAGATGAAATTGCGGCTCAGAGAGGGAGCGATTGTGAAAATGGAAATTCTTTGATGCAACAATTTAAAAATGTTGTTGCTATTGTTGACCCTCCACGCGCTGGACTCCATCCAACTGTGATCAAAGCTCTGAGGACTAATGAAGGACTGCGGAGGCTTGTCTACATATCCTGTAATCCTGAGAGTTTGGTGGCAAATGCTATTGAACTTTGCACTCCATCTCCTGCGAAAATGGAAAAAGGAAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGTCTTGCAAGACACAGAGCCAAGTCTATGCCTATCTCAGAGGCCTTCCAACCCATAAAAGCCATGGCCATTGATCTATTCCCACATACTGAACACTGTGAACTGGTGATGCTCCTCGAGAGGTAG 2496 0.4559 MAETGNTELSLSPSKTLNPSDPINGSHSPQSPAENAQIHQESSSPAPQPSDDVVSGEKRKREDSDTGVSDPSLNPLLKTSLCSYFRRHDGSCSHGSECRYAHGEEELRPRPDNTWDPTSERAKKVMKSETGDKCAVSMGVMMTEAVVDDADGEDNDNSNHALSKCLVHLPRKWGSDNLRGFLNQEGIPFKSAKKKKGMLVGFVTFEDQEQLKSSTKELEGKLIGSRSLKVADVIPRSFEKKSNVTLCVDSAQNADAALAKENTDENVDSETNGANLVVGDSMPKTRSLRDVVTPLAHMAYADQLEHKKGSLTQILKRLTRNARKACPSGVSLPEWILKSRDIGGLPCKLEGIIGSPRVNGYRNKCEFSVGYSVEGKVTVGFMLGNFREGVTAVEEAGDCPNVSTIALQYASILREFLQQSQLPVWNRFKNSGFWRQLTVREGRTDGKVADAEDFGGIVEVMLIVQVSTKGFDNELVTGEFEKLAQAFVAGANACSPSSPLTALVVQDHQGISNVAPADAPLRSLLTPKAVGDQISENDAMDFRIHDYISNLKFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGVEMNASAVSDAQRNAEINGIKNCRFICAKAEDVMGSLLKEHLNKPNEQVNVPSICGTDVEEISEGSTCPETENGEQESQCSENGRQEDEIAAQRGSDCENGNSLMQQFKNVVAIVDPPRAGLHPTVIKALRTNEGLRRLVYISCNPESLVANAIELCTPSPAKMEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFQPIKAMAIDLFPHTEHCELVMLLER 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0284 831 Gene3D - 71 110 - -
Alju10g0284 831 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 78 104 IPR000571 GO:0046872
Alju10g0284 831 SUPERFAMILY RNA-binding domain, RBD 168 237 IPR035979 GO:0003676
Alju10g0284 831 MobiDBLite consensus disorder prediction 53 67 - -
Alju10g0284 831 SMART c3hfinal6 76 104 IPR000571 GO:0046872
Alju10g0284 831 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 94 831 IPR045850 -
Alju10g0284 831 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 291 831 IPR010280 GO:0006396|GO:0008173
Alju10g0284 831 MobiDBLite consensus disorder prediction 674 705 - -
Alju10g0284 831 MobiDBLite consensus disorder prediction 1 73 - -
Alju10g0284 831 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 293 831 IPR029063 -
Alju10g0284 831 ProSitePatterns RNA methyltransferase trmA family signature 1. 726 758 IPR030390 -
Alju10g0284 831 Gene3D Vaccinia Virus protein VP39 528 830 IPR029063 -
Alju10g0284 831 MobiDBLite consensus disorder prediction 674 690 - -
Alju10g0284 831 Pfam tRNA (Uracil-5-)-methyltransferase 716 766 IPR010280 GO:0006396|GO:0008173
Alju10g0284 831 Pfam Methyltransferase domain 587 646 IPR025714 -
Alju10g0284 831 ProSiteProfiles Zinc finger C3H1-type profile. 76 105 IPR000571 GO:0046872
Alju10g0284 831 CDD AdoMet_MTases 589 643 - -
Alju10g0284 831 MobiDBLite consensus disorder prediction 1 50 - -
Alju10g0284 831 Coils Coil 301 321 - -
Alju10g0284 831 Gene3D - 165 252 IPR012677 -
Alju10g0284 831 SUPERFAMILY CCCH zinc finger 75 109 IPR036855 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju10g0284 tRNA_U5-meth_tr 3.3e-07 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju10g0284 10 2205652 2210814 Alju10g0284 10 2205652 2210814 ECH