Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0275 ATGGCTTCTTCCAAAAATTCCAAGACAGAACACAAGAGCGAAGATGCTGACAGCTCCAAACCAGCGAAGAAAGCCGCTAAACCCAGAAAAGAGAAGCACCTGGACAAGAAAAACAAGAGTATTAAGAAGAAAAAACTTAACAATCTTGATATGAATAAGGAAGATAAAGCGATCGTTGTTCCTTCTTCCAGTACCGAGTCCCATGAAAAATTCGAAGAGGAAGAGCGTCTGGAAGACAAGACTGAGATCACAAATGGCCGAACCAGTGCAATTAAACCCAAAAAAAACAAAGTCAAAGGAATTAAATATGATGACGAAGATGAAGCTGAAGGCAAAGGAGACGCCAAGGGCAATGTATTTCCCATTAATCGTATCCGGACGATAATTAGGGGCCAAGATCTTGAATTGCGTGTTTCCCAGGAAGCCATATTTGCCATCAACAAAGCCACGGAGATGTTCCTTAAACAATTTACGCGGGACAGTCATGCAACCTGTGTTCGGGATCGAAAAAAATCTCTGGCTTACAAACACCTTTCATCTGTTGTAAGTAAGCAGAGCAGATACGACTTTCTATCAGATTTTGTTCCAGAGAAAATAAAAGCAGAGGATGCATTAAGGGAGAGAAATTCCAGTGTAAATGGTGGTTAG 648 0.412 MASSKNSKTEHKSEDADSSKPAKKAAKPRKEKHLDKKNKSIKKKKLNNLDMNKEDKAIVVPSSSTESHEKFEEEERLEDKTEITNGRTSAIKPKKNKVKGIKYDDEDEAEGKGDAKGNVFPINRIRTIIRGQDLELRVSQEAIFAINKATEMFLKQFTRDSHATCVRDRKKSLAYKHLSSVVSKQSRYDFLSDFVPEKIKAEDALRERNSSVNGG 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0275 215 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 73 210 - -
Alju10g0275 215 MobiDBLite consensus disorder prediction 1 97 - -
Alju10g0275 215 MobiDBLite consensus disorder prediction 7 24 - -
Alju10g0275 215 MobiDBLite consensus disorder prediction 25 43 - -
Alju10g0275 215 Gene3D Histone, subunit A 5 197 IPR009072 GO:0046982
Alju10g0275 215 SUPERFAMILY Histone-fold 137 198 IPR009072 GO:0046982
Alju10g0275 215 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 120 182 IPR003958 -
Alju10g0275 215 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0275 Alju-ChrAlju10 2126093 2128372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0275 85 181 CCAAT-HAP5 Transcription Factor Family AT1G07980 38.144 7.91e-16 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Alju10g0275 CBFD_NFYB_HMF 2.6e-12 CL0012