Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0172 ATGGGTCAGGGTCTGAGCTGCGCAGGGAGCCATGAACATGGCCTCTTCACTGCGGTACAGCATGGAGATATATCCACTGTCAGAAATCTCTTACAGAGAGACCCAGCTATTGTGCACCACACTACCGTCTACGATCGCCATTCTGCTCTTCATATTGCCGCTGCTAATGGCCAGATCGAGATTCTGTCTATACTGTTAGATGGATCTGTTAATCCAGACGTCTTGAATCGTCAAAAGCAGACTCCGCTCATGTTGGCTGCAATGAACGGAAAGATCGCCTGTGTGAAAAAACTCCTTGAGGTTGGAGCTAATGTATTGATGTTTGATTCGCTTTACGGTAGAACCTGCCTGCACTATGCTGCCTACTACGGTCATTCTTCTTGCCTTGAAGCAATTCTTTCTGCGGCACAATCTAGTCCAGTGGCTGCTTCTTGGGGATTTGCTCGGTTTGTGAATATTAGGGATGGTAGAGGAGCGACGCCATTGCACCTGGCGGCCCGTCAGAGACGGCCTCAATGCGTGCATATTCTATTAGATAATGGAGCTCTTGTCTGTGCTTCAACAGGCGGATATGGCTGTCCTGGGAGCACTCCTCTTCATTTAGCTGCCAGAGGAGGATCGCTGGATTGCATCCGTGAACTGTTGGCATGGGGTGCAGATCGTCTTCAACGGGATGCTTCAGGGCGGATACCATATGTAGTTGCTCTGAAGCACAAGCATGGAGCATGTGCAGCATTGTTAAATCCTACATCTGCTGAACCTCTTGTCTGGCCTTCACCTTTGAAGTTCATCAGTGAACTCAATCCAGATGCCAAAGCATTATTAGAAAGGGCCTTGATGGACGCAAACAGGGAAAGGGAGAAAAATATATTGAAAGGAAGCGCTTACTCTCTTCCATCTCCATCACATTCTGATAATGAGGTTGATGACAATATCTCCGAGGCCAGTGAGACAGAACTGTGCTGCATCTGCTTTGAGCAGGTGTGCACAATTGAAGTCCAGGACTGTGGCCACCAGATGTGTGCACAATGCACTTTAGCCCTCTGTTGCCACAACAAGCCTAATCCTGCTACTGCTTGCCTTACTCCTCCAGTTTGTCCATTTTGCCGTAGCACCATAGCTAGACTGGTGGTTGTGAAGATAGAGAGTCACGAGGACACAGATGTAGAAGCTGGGGATGTCAGTTCTTCAAAGTTAAGCAAGTCAAAGAAAGCCCGAAACTTGAATGAAGGCAGCAGCAACAGCTTCAAGGGACTATCATTCGGAAAAATGAGTGGACGCAGCTCTGGAAGGATTGCTGCGGACAATGAGTGGGTTGATAAAGAGTGA 1329 0.4823 MGQGLSCAGSHEHGLFTAVQHGDISTVRNLLQRDPAIVHHTTVYDRHSALHIAAANGQIEILSILLDGSVNPDVLNRQKQTPLMLAAMNGKIACVKKLLEVGANVLMFDSLYGRTCLHYAAYYGHSSCLEAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPQCVHILLDNGALVCASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHKHGACAALLNPTSAEPLVWPSPLKFISELNPDAKALLERALMDANREREKNILKGSAYSLPSPSHSDNEVDDNISEASETELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPATACLTPPVCPFCRSTIARLVVVKIESHEDTDVEAGDVSSSKLSKSKKARNLNEGSSNSFKGLSFGKMSGRSSGRIAADNEWVDKE 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0172 442 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Alju10g0172 442 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Alju10g0172 442 Pfam Ankyrin repeats (many copies) 195 232 IPR002110 GO:0005515
Alju10g0172 442 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Alju10g0172 442 SMART ANK_2a 157 186 IPR002110 GO:0005515
Alju10g0172 442 SMART ANK_2a 10 39 IPR002110 GO:0005515
Alju10g0172 442 SMART ANK_2a 194 223 IPR002110 GO:0005515
Alju10g0172 442 SMART ANK_2a 112 142 IPR002110 GO:0005515
Alju10g0172 442 SMART ANK_2a 78 107 IPR002110 GO:0005515
Alju10g0172 442 SMART ANK_2a 45 74 IPR002110 GO:0005515
Alju10g0172 442 Gene3D - 145 250 IPR036770 -
Alju10g0172 442 SUPERFAMILY Ankyrin repeat 15 250 IPR036770 -
Alju10g0172 442 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Alju10g0172 442 CDD RING-HC_XBAT31-like 313 377 - -
Alju10g0172 442 ProSiteProfiles Zinc finger RING-type profile. 321 370 IPR001841 -
Alju10g0172 442 MobiDBLite consensus disorder prediction 389 442 - -
Alju10g0172 442 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Alju10g0172 442 MobiDBLite consensus disorder prediction 389 405 - -
Alju10g0172 442 Gene3D - 9 144 IPR036770 -
Alju10g0172 442 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN 47 182 - -
Alju10g0172 442 Pfam Ankyrin repeats (3 copies) 112 183 IPR002110 GO:0005515
Alju10g0172 442 Pfam Ankyrin repeats (3 copies) 15 108 IPR002110 GO:0005515
Alju10g0172 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 389 IPR013083 -
Alju10g0172 442 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Alju10g0172 442 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Alju10g0172 442 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Alju10g0172 442 MobiDBLite consensus disorder prediction 406 422 - -
Alju10g0172 442 SUPERFAMILY RING/U-box 320 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0172 Alju-ChrAlju10 1262658 1265280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0172 50 247 Miscellaneous Gene Families AT5G02620 28.641 3.82e-06 47.4