Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0148 ATGATGAACTCCGACGTGGCTCCTCCTCCGTCCTCCCACTGGTGCTACAGCTGCACCCGCTTTGTTCGCCTCTTAGATCGGGAAGATGTCGCCTGTCCTCACTGCCAAAGCGGCTTCGTTGAAGAGATCCACAACCACCCTTCCTCCGATCATCACCACCTCAGCCCCTTTCCTCCTTCCATCTTTCCCGATTCAGCTCCTACTTCGTACGATTTCAGCAGACAAGGGTTCCGCCGAAGACGCCGCAACGCCGGCAACAGATCTCCCTTTAACCCTGTTATTGTTCTCCGTGGACCCGTTGACGGAGCCGCTGTCGGTGGTGACCAGGAGGAAAGCAGCTTCGAGTTGTACTACGATGACGGTGACGGCTCCGGTCTCCGACCCTTGCCGCCGGCTATGTCTGAGTTCTTGCTAGGGTCAGGGTTCGAACGGCTTCTGGAACAGTTTGCCCAGATCGAAATGAATGGGTTCGGGCGTCCCGAGAACCCGCCTGCTTCCAAAGCAGCCATAGAGTCGATGCCTACGGTTGTTATTGAGGAGACCCATGTGGGTTCCGATGCCCACTGTGCCGTGTGCAAGGAGGCGTTCGAACGCGGGACGGAGGCGCGTGAGATGCCCTGCAAGCACATATACCACTCGGAATGCATCCTCCCGTGGCTTTCAATGCGCAATTCCTGCCCTGTCTGCCGCCACGAGCTGCCGTCAGATCGAAACACTGTAGACAGTAGAATGTCGGGGCAAATCGATGACGAGACGGTAGGGTTGACGATTTGGAGGCTGCCTGGTGGGGGCTTCGCGGTTGGAAGGTTTTCCGGGGGTCGCAGAGCCGGCGAGAGTCATTTCCCTGTTGTGTACACAGAAATGGACGGTGGACTGAATACAAATGGAGCTCCGAGAACAGTTTCCCGAGCAGCAAGAAGCACCAGAGTCAGAGAAAGTCGTGGCTTTGGCAGAATTGTTCGCAATTTCTTGTCATTCTTTGGGAGGCGTCGGTCAAGGTCAGGCTCATCTTCGTCAACTGGTTCTGATCGCGAGTCCATGAGTTTAAGTCGTAGCCATTCGATCTCACTATTCGGTAGGAACTCAAGTAGGCGCGGCCGAACTTGGGTTATGGAAGATTGA 1122 0.557 MMNSDVAPPPSSHWCYSCTRFVRLLDREDVACPHCQSGFVEEIHNHPSSDHHHLSPFPPSIFPDSAPTSYDFSRQGFRRRRRNAGNRSPFNPVIVLRGPVDGAAVGGDQEESSFELYYDDGDGSGLRPLPPAMSEFLLGSGFERLLEQFAQIEMNGFGRPENPPASKAAIESMPTVVIEETHVGSDAHCAVCKEAFERGTEAREMPCKHIYHSECILPWLSMRNSCPVCRHELPSDRNTVDSRMSGQIDDETVGLTIWRLPGGGFAVGRFSGGRRAGESHFPVVYTEMDGGLNTNGAPRTVSRAARSTRVRESRGFGRIVRNFLSFFGRRRSRSGSSSSTGSDRESMSLSRSHSISLFGRNSSRRGRTWVMED 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0148 373 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Alju10g0148 373 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Alju10g0148 373 CDD RING-H2_RNF126-like 189 230 - -
Alju10g0148 373 MobiDBLite consensus disorder prediction 330 353 - -
Alju10g0148 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 68 234 - -
Alju10g0148 373 Pfam Protein of unknown function (DUF1117) 253 361 IPR010543 -
Alju10g0148 373 SMART ring_2 189 229 IPR001841 -
Alju10g0148 373 Pfam Ring finger domain 188 230 IPR001841 -
Alju10g0148 373 SUPERFAMILY RING/U-box 169 239 - -
Alju10g0148 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 236 IPR013083 -
Alju10g0148 373 FunFam E3 ubiquitin-protein ligase RING1-like 151 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0148 Alju-ChrAlju10 1096881 1098002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0148 128 236 C3H Transcription Factor Family AT5G01980 44.954 2.92e-27 110