Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0101 ATGGAGTCAGATCTTGAGCACCACTCTTCAATGTTACATGGTCATCAGCAGCAGCAGCAGCAGATGAATTCTGGTTTAACACGGTATCGATCGGCGCCAAGCTCGTATTTCACAAATATCATAGACAAGGAATTTTACGAGGACATGTTCAATCGGCCTTCCAGCCCCGAAACGGAGCGAATCTTTTCACGGTTTATGAATAGCCTGGCTAACGAGTCAGAAGATGCACCAGCTCAATATCTTACATCTACTCGACAAAATTCTGCAGTGAAGGAAGAGATGGATCAGCAGTCTCAGGTTATGCCTTCCGTGAACAATGAACCGGTGGCTCTCCACCCGCCGCCGCAGCAGCAGCATAGCAATATCAGTAATTTTGTTTCTGCTCCGCCGAATCTTTTCCAAAGCTCTGGACGTCCACCTTTACCGAATCAGAGCCTGACTTCATCAGCTATGGACGGAGTCTATTCGACGGGAGGTCATCGATTGCCACATATGAAGAGTCCTGATGCAAATAATTCCAATCTAATCAGGCACAATAGCTCACCTGCAGGATTCTTTTCCACCTTAAACATTGAAAGCTATGCTTCTATGAGGGGCACAGGCATATTGGGAGTTGGTAATAACGCAAGCGAAGAAGCAAACTTCTCTTCTGCGACGAGGATGAAAAATCCTCCAAAATACTCAACAGGCCTAATGTCATCCATAGCTGAAGTTGGGGACAAAGGCGACGCTGAGCAAAATCAAGACACTGAATCTTTTGCCGAAAGCCAAGGTAACGAGTTTATCACAGGTTTCCCCGCAGGTCCTTGGGACGAATCTGCACTCATGTCTGACGATACTGCTGGACTAAAAAGACTTAGAGACGAGGATGAAAAAACATTTTCCGAGACTCAGAACGAGTCAGGCAGCCAGCCTCGTCCTGCTCCTTTGGCTCATCACCTCAGTTTGCCAAAAACTTCAGAAGAAATGGCAGCCATTGAAAAGTTTCTGCAGTTCTCAGATTCTGTTCCCTGTAAAATTCGTGCCAAGAGAGGCTGTGCTACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAGATCAGTGAGCGTATGAGGAAACTACAAGATCTGGTTCCCAACATGGACAAACAAACAAACACAGCAGACATGTTGGACCTGGCTGTAGACTACATTAAAGACCTTCAAAAGCAGGTTGAGACGCTTTCAGATAGTCACGCAAAGTGCACGTGTCCACACAAGCAGAGGCAGTAA 1257 0.4638 MESDLEHHSSMLHGHQQQQQQMNSGLTRYRSAPSSYFTNIIDKEFYEDMFNRPSSPETERIFSRFMNSLANESEDAPAQYLTSTRQNSAVKEEMDQQSQVMPSVNNEPVALHPPPQQQHSNISNFVSAPPNLFQSSGRPPLPNQSLTSSAMDGVYSTGGHRLPHMKSPDANNSNLIRHNSSPAGFFSTLNIESYASMRGTGILGVGNNASEEANFSSATRMKNPPKYSTGLMSSIAEVGDKGDAEQNQDTESFAESQGNEFITGFPAGPWDESALMSDDTAGLKRLRDEDEKTFSETQNESGSQPRPAPLAHHLSLPKTSEEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVETLSDSHAKCTCPHKQRQ 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0101 418 MobiDBLite consensus disorder prediction 1 26 - -
Alju10g0101 418 Gene3D - 347 416 IPR036638 GO:0046983
Alju10g0101 418 Pfam Helix-loop-helix DNA-binding domain 351 397 IPR011598 GO:0046983
Alju10g0101 418 MobiDBLite consensus disorder prediction 107 154 - -
Alju10g0101 418 MobiDBLite consensus disorder prediction 107 170 - -
Alju10g0101 418 SMART finulus 352 402 IPR011598 GO:0046983
Alju10g0101 418 FunFam Transcription factor bHLH130 family 347 416 - -
Alju10g0101 418 MobiDBLite consensus disorder prediction 12 26 - -
Alju10g0101 418 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 84 412 - -
Alju10g0101 418 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 349 411 IPR036638 GO:0046983
Alju10g0101 418 MobiDBLite consensus disorder prediction 290 312 - -
Alju10g0101 418 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 396 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0101 Alju-ChrAlju10 764378 766659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0101 1 412 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 42.043 1.56e-78 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju10g0101 HLH 5.5e-10 No_clan