Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0082 ATGACTCGTTCCGAGCAAAATTTCACCACCTTGAAGGAGTCAGATATTCAGCAAAGACAGGAGAATGACATCACAAGAGTAGCGACCGTTCTTTTTATCTCAAGGGTTGATGCCTCCATCTTACTTCGTCACTATAATTGGAATGTCAGCGAAGTGCATGAAGCATGGTTTGCTAATGAAGAACATGTCCGAAGAACAGTTGGGTTATTGGGAAAGCCAGTTGTCCTGTTTCCTAATGCTAGGGAGCTTGCCTGTGGCATCTGTTTTGAAACTTATCCTTGTTCACGGATGGAGTCTGTTGCTTGTGGTCATCCCTATTGCATCTCATGTTGGGAAGGATATATTGGCACAGCTATTAATGATGGTCCTGGATGTTTGATGCTGCGGTGTCCTGATCCCTCATGTGGTGCAGCTGTTGGTCAAGATATGATTGATCGATTAGCATCTCATGAGGATAAGCTGAAGTATTCTCGTTACCTTTGTAGGTCCTATGTTGAAGACAACAAGAAGACCAAGTGGTGTCCTGCTCCAGGATGTGAATATGCAGTTACATTTGATGCTGGTGGTGGAAATTATGATGTTACTTGCCTCTGTTCTTATTGCTTCTGCTGGAATTGCACTGAGGAGGCTCACCGTGCTGTGGATTGTGGCACTGTGGCAAAGTGGATTTTGAAGAATAGTGCAGAGTCTGAGAACATGAACTGGATACTTGCCAACTCAAAGCCCTGTCCCAAGTGCAAGAGACCAATTGAAAAAAACCAAGGGTGCATGCACATGACCTGTACACCCCCATGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGAGCATGGTGAAAGGACTGGTGGCTTCTATGCTTGCAATCGTTATGAGGCAGCTAAACAAGAGGGAGTGTGCATGCAGCATGACGAAGCTGAAAGAAGAAGAGAAATGGCAAAGAATTCATTGGAAAAATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAGAAAGCTCTTGCTGATCTACATCAAATGCAAACAGTCCATCTCGAGAAGCTTAGCGACACACAGTGCCAACCTGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAATGTAGGCGAGTGCTGAAATGGACATATGCTTATGGGTACTATTTACCAGAGCATGACCATGCTAAAAGACAGTTTTTTGAGTACTTACAAGGTGAGGCAGAATCCGGTTTGGAGAGACTTCACCAATGTGCTGAAAAGGAATTGCAACAGTTTCTCAATGCTGATGGCCCATCTAAAGAGTTCAATGACTTCCGAACCAAGCTAGCTGGACTGACCAGTGTGACTAGGAACTACTTTGAGAATTTGGTTAGGGCTCTAGAGAATGGTTTGTCCGATGTGGACAGTAATGGAGCTGCTTCCAGCAAAGCAATGAGCTCAAAAAATGCCGCCAGCAGCAGCAAGGGGAGAGGTGGAAGAGGAAAAGGAACCACTCGAACAAGCAGTTCCAACAAAATGAGTGATGATAGTAATTGGCATTGTGAGCACTGTACCTATGGAAATACTATGTCTTTTAACACATGCCAAATGTGCCATCTACAGCGTCGATAA 1620 0.4451 MTRSEQNFTTLKESDIQQRQENDITRVATVLFISRVDASILLRHYNWNVSEVHEAWFANEEHVRRTVGLLGKPVVLFPNARELACGICFETYPCSRMESVACGHPYCISCWEGYIGTAINDGPGCLMLRCPDPSCGAAVGQDMIDRLASHEDKLKYSRYLCRSYVEDNKKTKWCPAPGCEYAVTFDAGGGNYDVTCLCSYCFCWNCTEEAHRAVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSEHGERTGGFYACNRYEAAKQEGVCMQHDEAERRREMAKNSLEKYTHYYERWASNQSSRQKALADLHQMQTVHLEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHDHAKRQFFEYLQGEAESGLERLHQCAEKELQQFLNADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKAMSSKNAASSSKGRGGRGKGTTRTSSSNKMSDDSNWHCEHCTYGNTMSFNTCQMCHLQRR 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0082 539 Pfam Ariadne domain 306 470 IPR045840 -
Alju10g0082 539 Pfam IBR domain, a half RING-finger domain 233 280 IPR002867 GO:0008270
Alju10g0082 539 Pfam IBR domain, a half RING-finger domain 155 216 IPR002867 GO:0008270
Alju10g0082 539 FunFam RBR-type E3 ubiquitin transferase 217 470 - -
Alju10g0082 539 CDD BRcat_RBR_ANKIB1 161 225 - -
Alju10g0082 539 CDD Rcat_RBR_ARI7-like 239 293 - -
Alju10g0082 539 MobiDBLite consensus disorder prediction 473 512 - -
Alju10g0082 539 ProSiteProfiles TRIAD supradomain profile. 81 294 IPR044066 -
Alju10g0082 539 Gene3D - 214 470 - -
Alju10g0082 539 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 18 385 IPR031127 GO:0004842|GO:0016567
Alju10g0082 539 ProSiteProfiles Zinc finger RING-type profile. 85 129 IPR001841 -
Alju10g0082 539 SUPERFAMILY RING/U-box 155 223 - -
Alju10g0082 539 SUPERFAMILY RING/U-box 81 163 - -
Alju10g0082 539 ProSitePatterns Zinc finger RanBP2-type signature. 515 534 IPR001876 -
Alju10g0082 539 SMART ibrneu5 154 216 IPR002867 GO:0008270
Alju10g0082 539 SMART ibrneu5 220 290 IPR002867 GO:0008270
Alju10g0082 539 FunFam RBR-type E3 ubiquitin transferase 79 168 - -
Alju10g0082 539 SUPERFAMILY Ran binding protein zinc finger-like 511 538 IPR036443 -
Alju10g0082 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 168 IPR013083 -
Alju10g0082 539 SUPERFAMILY RING/U-box 235 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0082 Alju-ChrAlju10 581004 588141 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0082 3 538 ARIADNE family AT1G65430 71.828 0.0 803