Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0039 ATGGATGAGATGGTAATTCCGTCGAAGGCTTTCAGACAAAACGCCATTCAGGCTTTCAGACAAAACGCCATTCACTTCTCTGCTTTTCTTCTTCATAGAAAGCCTCCTTCTGCTTGTAATCTCAGACCTCTGTTTACGAGGTTATTGATTTGTGTATACGGAGATGATGATAGATCTGTGAACAACTTCTTGCGAGCTGGTAAACGGGGAAAGAATGTCTTGTGCAACTTTTTATTTAAAAGATCTCGAGCATTGGCTGAATTTCGATTTCAATTTTTGAGTTTCAACCTAATCATGGAACACCCTTCTTCTCATAAGGGAAAAGACTGTGAATACTGGAATTCTCCTCCAGCCCAGTTGGTGGGACCGGCACCATTAGATGGTGGCACAAAGATTTCAGTTTCAGAGGATATGCTGAACACCTTCTCTGAGCTCATAAATTTTGATACTTATGCTGGTTGGTGCAATAGCCCATCAACCACTGATCGGGTTTTAGCTAACGGGCTTTCATCATCTGCCTCGGTGCCATATGCATCACTTGATGGATTCAATTTAATGGAGGAGAGCTGTGGGTCATTCTTGGCAAGTGATGTTAATAAGAATTACAATGTGATAAGAAGTTCCCCCAACTCTGGAGAGAAAGTTGCATTTCATCAAATGGAGGCCCAACTTGAGTTGTCAGATGATGGAAATGATGCTGGGAACTTAAACTATAAATGTCATCGTAATGAATCTTTTGAAGAACTTGGTGACTTAGTGATGGGCAATCATATAGTTTCTAGGCCACCTGGCTGGTCACTAGATGAGAGAATGCTGTGGGCTTTGTCCCTTTTCAAGGAATCTGCCGGTGGTGGAATCTTGGCACAAGTTTGGGTACCAATAAAGCATGGAGATGGATTCATCTTAACCACAAGTGAGCAACCCTATTTGCTGGACCAAATGCTTGCAGGTTACCGTGAAGTGTCAAGGACATTTACATTCTCAGCAGAAGGAAGGCCGGGCTCTGTCTTAGGACTTCCTGGTCGTGTCTTTATCTCTAAAGTTCCTGAGTGGACGTCCAATGTTTGTTACTACACCAAGGCTGAATATTTGAGGATTGAGCATGCAATTAATCACAAGGTTCGTGGATCAATTGCAGTTCCAGTGTTTGATCTTTATTCTGAAATGCCATGCTGTGCTGTACTGGAACTAGCCACTACAAAGGAAAAGACTGATTTTGATAGGGAACTGGAAATTCTTTGCCAAGCACTCCAGGTTGTGAATTTAAGGACTACTGTGACTCCCCGACTTCTTCCCCAGAGTCTCTCAAATAAGAAAAGAGCAGCTTTAATGGAGATAATAGATGTGTTACGGGCTGTGTGTCATGCGCATAGTTTGCCTCTGGCATTGACATGGATTCCCTGTTGTTACTTGAAGGGAATCGGCAATGAAAGTATGAGAGCACTAATTAAGGAGGGTCATTCAAGTTCTAGTGGTAAATATGTATTATGCATCGAAGAATCAGCTTGCTATGTTAATGATAGAAAGATGGAAGGGTTTGTTCATGCATGTGTTGAACATCATCTTGAGGAAGGGCAAGGTACAGCCGGCAAAGCTATTCAGTCAAATCAGCCATTCTTCTATCCTGATGTCAAGGCATATGATGTTGGTGAATATCCACTTGTTCAACATGCACGAAAATACAACTTGAACGCTGCGGTTGCTATCAGGCTACGGAGTACCTTCACTAATGATGATGATTACATTTTAGAATTTTTTCTACCTGTCAATATGAGAGGGAGTTCAGAGCAGCAACTTTTATTGGACAACCTCTCAGGTACCATGCAGAGAATTTGTAAGAGTTTAAGGACGGTTACTGATACCGAATTATCAGGGATATCAGGGTCACTGGTAAACCAAAATGAAAAAGTACGGGATTTTTCACCTATATCCAGGAAAAACTCTCAAACGGAATTGATGGATGGTGGGAAGGACTCAGTCAGTAAGATTTCATTTAAGGCTTGCAAGTTGAGAAACAATGGAATTGAAGCTGCTTATAACCAGGAAATGAATGTTTCAAGAAGGCAGGTTGAAAAAAAGAGAAGCACAGGTGAGAAGAATGTCAGCTTGAGTGTTCTCCAGCAATACTTTTCTGGTAGTCTAAAGGATGCCGCAAAGAGCATTGGTGTTTGTCCTACAACTCTGAAACGTATATGCAGGCAACATGGCATTTCAAGATGGCCATCCCGTAAAATAAATAAAGTGAATCGCTCATTAAAGAAAATCCAGACTGTGCTTGATTCTGTTCAGGGAGTGGAAGGAGGGCTAAAGTTCGACTCTTCTTCAGGGGGGTTTGTGGCAGGAGGTTCAATCGTTCAAGAATTTGATGCGCATGGTCGTCTTTTGTTCTCGGAGAAGAGTATGCCCATACAAGATCCTGAGTGTGTTGCAAAATATACAGTCTCAGTGCCTTCTGTACCTTGTAGTGAAGGAGAGAATTCAGCAATCAAGTTGGAAGATAATGATGTTTATTTGGCTGATAACCAGCTTATGTGCTCACAAGGTGTAGTTATCCCAAATTCTTGCGAGGGAGAATTGAAGAAAGCCAAAGCTTCTTTTGTTGATTGTAGTCAATATTCAAAATCAATGGCCTTAGATGATGGATCATGCCGGATGGTCAAGGCTCAGGGATGTCCTGAGCAAGCATGCCTCGGCCCAGTTGCTACAAAAGATGGAAACGCATGGGGTCTGAACAAGGATTGTCAGGGAGCGAAAAATTCTGGTCCTGATATTGTCTCTTGGAGTTCAAGCTCTCTGGTTGCTGATGAGATGGAAAATATTGTGGATGGGGACAATGGGATTGTTGAACACAGCCAACCTACATCTTCAAACGTGACAGACTCATCCAATGGCTCTGGTTCAATGGTCCATGGCAGTTCGTCTGGAGCTCAAAGCTTTAAGAATAAGCATTCCAAAGTCAAATTAATGCTTGCTGACAGTGGATCAAAAATTATTGTGAAAGCCACCTATAAAGACGATACTATACGCTTCAAGTTTGATCCATCTGCAGGTTGTTTCCAACTATACGAAGAAGTGGCAACAAGATTCAAATTACAAAATGGGTCATTCCAGCTTAAATATCTTGATGATGAAGAGGAGTGGGTGATGTTGGTAAATGACTCAGATTTGCAAGAGTGCGTAGAAATATTGGAAGATATGGGCACAAGTAGTGTGAAGTTTCTTGTTCGTGATATACCTTGCTTCTTGAGCAGCTCTGGTAGCAGCAGTTGCTTCTTGGAAGGCTCCTAG 3288 0.4206 MDEMVIPSKAFRQNAIQAFRQNAIHFSAFLLHRKPPSACNLRPLFTRLLICVYGDDDRSVNNFLRAGKRGKNVLCNFLFKRSRALAEFRFQFLSFNLIMEHPSSHKGKDCEYWNSPPAQLVGPAPLDGGTKISVSEDMLNTFSELINFDTYAGWCNSPSTTDRVLANGLSSSASVPYASLDGFNLMEESCGSFLASDVNKNYNVIRSSPNSGEKVAFHQMEAQLELSDDGNDAGNLNYKCHRNESFEELGDLVMGNHIVSRPPGWSLDERMLWALSLFKESAGGGILAQVWVPIKHGDGFILTTSEQPYLLDQMLAGYREVSRTFTFSAEGRPGSVLGLPGRVFISKVPEWTSNVCYYTKAEYLRIEHAINHKVRGSIAVPVFDLYSEMPCCAVLELATTKEKTDFDRELEILCQALQVVNLRTTVTPRLLPQSLSNKKRAALMEIIDVLRAVCHAHSLPLALTWIPCCYLKGIGNESMRALIKEGHSSSSGKYVLCIEESACYVNDRKMEGFVHACVEHHLEEGQGTAGKAIQSNQPFFYPDVKAYDVGEYPLVQHARKYNLNAAVAIRLRSTFTNDDDYILEFFLPVNMRGSSEQQLLLDNLSGTMQRICKSLRTVTDTELSGISGSLVNQNEKVRDFSPISRKNSQTELMDGGKDSVSKISFKACKLRNNGIEAAYNQEMNVSRRQVEKKRSTGEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDSSSGGFVAGGSIVQEFDAHGRLLFSEKSMPIQDPECVAKYTVSVPSVPCSEGENSAIKLEDNDVYLADNQLMCSQGVVIPNSCEGELKKAKASFVDCSQYSKSMALDDGSCRMVKAQGCPEQACLGPVATKDGNAWGLNKDCQGAKNSGPDIVSWSSSSLVADEMENIVDGDNGIVEHSQPTSSNVTDSSNGSGSMVHGSSSGAQSFKNKHSKVKLMLADSGSKIIVKATYKDDTIRFKFDPSAGCFQLYEEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLQECVEILEDMGTSSVKFLVRDIPCFLSSSGSSSCFLEGS 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0039 1095 Gene3D - 992 1078 - -
Alju10g0039 1095 SMART PB1_new 996 1078 IPR000270 GO:0005515
Alju10g0039 1095 MobiDBLite consensus disorder prediction 948 978 - -
Alju10g0039 1095 CDD PB1_NLP 997 1077 IPR034891 -
Alju10g0039 1095 ProSiteProfiles PB1 domain profile. 996 1078 IPR000270 GO:0005515
Alju10g0039 1095 Pfam RWP-RK domain 700 748 IPR003035 -
Alju10g0039 1095 MobiDBLite consensus disorder prediction 944 978 - -
Alju10g0039 1095 PANTHER PROTEIN NLP8 241 1089 IPR045012 GO:0003700
Alju10g0039 1095 ProSiteProfiles RWP-RK domain profile. 681 768 IPR003035 -
Alju10g0039 1095 Pfam PB1 domain 999 1077 IPR000270 GO:0005515
Alju10g0039 1095 SUPERFAMILY CAD & PB1 domains 991 1080 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0039 Alju-ChrAlju10 348146 354286 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0039 99 1092 NLP Transcription Factor Family AT2G43500 47.861 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Alju10g0039 PB1 1.2e-16 CL0072