Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000618g0005 ATGGTATTGGGCTCTCACTGTATGTTCCTAAATATTATCTTTCTTCACTTTGTTTATTCTTACTTAGAGAAACAGAGGAAAGATCTTCCCACCCAAGTGCAAGCGGAACCAAGCGACTTGGTGGATGACAGAAAGATTAAAATGGATGATGATATCAAGGAGGAGCCACAAGAATTTAGCTTTCAAAGAAACAGGAAAGCAAGACTGATTGTTCGAAATCTCTCTTTTAAGAGGGTACAGATGTTCTTTGAGGGAACTGTTGTAGACAATTTGGCAACAGAAGATAAGGTGAAATCGTTTTTCAGTCCATATGGAGAACTAACAGACATTCAGATCTTGCGTAAACCTGATGGAAAACTTGTTGGTTGTTGTTTTATTGAGTATGTCTTGAAGAATAGTGCTGCAAAAGCTATTGCCCACACCAGTGGAAAAACATTTTTAAATAGATCTATTGTGGTAGATTGGGCCGTTTCCAAAACAAGATTCACTGAAAAGACTCAGAAACCAGAAAATTTTGAGAATTCTGATTCATCTGATGATAGTAATCAAAGAAATGTCTTTGATGAAAAAAAAGTGAAGGAGGAAAGCAATGGCAATATTCAAATGAGTGATTCTGAAGGTGGTGAAGATGATGATAATGACAATGTTGATGATAGTGATGATAGTGGAACAGAAGATCACAACAGTGAAACTGAGGAAGATGACGACAATAGAAACTTCTCTGCTGCTTCTGGTGTTTCACAAGCTGATATGGCCAAACGCTTACAGCTGGAACAGTGGAAGACACAAATGCTCAAAAATTTGAACAAATTTGTGTCTAGGATCAGGCTTGTCATTCAAAACTTACCACCTTCTTATGATGATAATAAATTAAGAGCTTTGTGCTTGAAGTATGGAGGGCCCAACACAATAATAACTGAGGCTAGAGTGATGCGTGATCTCAGAAATGTTGATGCAAATGGAAAAGGAAAGTCCAAAGAGTATGGTTTTGTCACTTTCACTAACCATGAAAATGCACTGCAAGCACTTCGTGGCATAAATAACAACCCGGGTACCTTCACCCCAGCCAAGCGACCCATTGTTGCCTTTTCTATTGAGGACAGGAAAGCTCTAAATTTACGTCAGAAGAGACTAGAAAGAAGCAAAATGGGTCTCAAGGATGGAAGATCAAGTAATTTTCCGCAAAAAGCATGGGAGAGACAGCATCAAAAGAAAAATCACAATAATTCTACCTCTCAAGCATTGGAGCCGAAAGGAATTTCTCAAGTTCCTCTGAATAGCCCTGGAATCCAGGAAACTTCAAGAAGTCACACAATTACTGATACTACTGGAAAACTGTCCAAAAAAAAATAA 1353 0.3829 MVLGSHCMFLNIIFLHFVYSYLEKQRKDLPTQVQAEPSDLVDDRKIKMDDDIKEEPQEFSFQRNRKARLIVRNLSFKRVQMFFEGTVVDNLATEDKVKSFFSPYGELTDIQILRKPDGKLVGCCFIEYVLKNSAAKAIAHTSGKTFLNRSIVVDWAVSKTRFTEKTQKPENFENSDSSDDSNQRNVFDEKKVKEESNGNIQMSDSEGGEDDDNDNVDDSDDSGTEDHNSETEEDDDNRNFSAASGVSQADMAKRLQLEQWKTQMLKNLNKFVSRIRLVIQNLPPSYDDNKLRALCLKYGGPNTIITEARVMRDLRNVDANGKGKSKEYGFVTFTNHENALQALRGINNNPGTFTPAKRPIVAFSIEDRKALNLRQKRLERSKMGLKDGRSSNFPQKAWERQHQKKNHNNSTSQALEPKGISQVPLNSPGIQETSRSHTITDTTGKLSKKK 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000618g0005 450 Gene3D - 22 171 IPR012677 -
Alju1000618g0005 450 SMART rrm1_1 276 363 IPR000504 GO:0003723
Alju1000618g0005 450 SMART rrm1_1 68 154 IPR000504 GO:0003723
Alju1000618g0005 450 MobiDBLite consensus disorder prediction 166 197 - -
Alju1000618g0005 450 Gene3D - 275 364 IPR012677 -
Alju1000618g0005 450 SUPERFAMILY RNA-binding domain, RBD 92 348 IPR035979 GO:0003676
Alju1000618g0005 450 MobiDBLite consensus disorder prediction 377 450 - -
Alju1000618g0005 450 FunFam RNA-binding motif protein 28 274 364 - -
Alju1000618g0005 450 MobiDBLite consensus disorder prediction 205 232 - -
Alju1000618g0005 450 PANTHER RNA-BINDING MOTIF PROTEIN 14B 52 236 - -
Alju1000618g0005 450 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 151 IPR000504 GO:0003723
Alju1000618g0005 450 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 348 IPR000504 GO:0003723
Alju1000618g0005 450 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 158 IPR000504 GO:0003723
Alju1000618g0005 450 MobiDBLite consensus disorder prediction 407 441 - -
Alju1000618g0005 450 CDD RRM4_RBM28_like 276 367 - -
Alju1000618g0005 450 MobiDBLite consensus disorder prediction 166 241 - -
Alju1000618g0005 450 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 383 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000618g0005 101 343 Eukaryotic Initiation Factors Gene Family AT4G34110 27.165 5.53e-10 59.7