Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000605g0014 ATGAGACTTCGCTCGGCTCGGGGCCGATTGATGCGGGCGGAGGGCCACCTGGGGGTGACTCTCTCCACCCCTGCTGGGCGTTGGCCTCACCCCCTTCCGCCCGCTTTGCATTTAAATGAGGAGACCATGTTGGACAAGGAAAAGAAGCGGTTCCATGAGATGGCGGAGAAGGACAAGAAGAGGTACGACTCTGAGATGCAGGACTACGTCCCCCCTGTTGGGGACAAGCGCGGCAAGAAGAGGAAACTGCCCAAGGATCCCAATGCTCCCAAGCGCTCATTATCTGCGTTCTTCTGGTTCTGCAATGATGAAAGAGGAAGGGTGAAGGCTGCGCACCCTGACATGACTGTTGGAGAGATTGCCAAGGAATTGGGGAAGAAGTGGTCTGACATCTCTCCCGAGCTCAAGAATAAGTATGAGCAGATGGCGGAAAAGGACAAGGCCCGGTATGAAAGGGATATGACTGCTTACAAGAAGAAACCTAAGGGTGGTATGCCTATGCCCAACTTGGGTCAGCAACAGAAAGCAGAAAGCGATGAGGATGACGATGATGATGAGGGTGAAGATGATGACGAATAG 579 0.5354 MRLRSARGRLMRAEGHLGVTLSTPAGRWPHPLPPALHLNEETMLDKEKKRFHEMAEKDKKRYDSEMQDYVPPVGDKRGKKRKLPKDPNAPKRSLSAFFWFCNDERGRVKAAHPDMTVGEIAKELGKKWSDISPELKNKYEQMAEKDKARYERDMTAYKKKPKGGMPMPNLGQQQKAESDEDDDDDEGEDDDE 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000605g0014 192 Pfam HMG-box domain 41 69 IPR009071 -
Alju1000605g0014 192 SUPERFAMILY HMG-box 81 162 IPR036910 -
Alju1000605g0014 192 Gene3D High mobility group box domain 83 176 IPR036910 -
Alju1000605g0014 192 PRINTS High mobility group (HMG1/HMG2) protein signature 105 123 - -
Alju1000605g0014 192 PRINTS High mobility group (HMG1/HMG2) protein signature 123 142 - -
Alju1000605g0014 192 PRINTS High mobility group (HMG1/HMG2) protein signature 142 162 - -
Alju1000605g0014 192 PRINTS High mobility group (HMG1/HMG2) protein signature 42 64 - -
Alju1000605g0014 192 Pfam HMG (high mobility group) box 90 158 IPR009071 -
Alju1000605g0014 192 Coils Coil 140 160 - -
Alju1000605g0014 192 MobiDBLite consensus disorder prediction 142 159 - -
Alju1000605g0014 192 PANTHER HIGH MOBILITY GROUP PROTEIN DSP1 41 184 - -
Alju1000605g0014 192 MobiDBLite consensus disorder prediction 51 82 - -
Alju1000605g0014 192 SUPERFAMILY HMG-box 42 73 IPR036910 -
Alju1000605g0014 192 Gene3D High mobility group box domain 40 82 IPR036910 -
Alju1000605g0014 192 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 90 158 IPR009071 -
Alju1000605g0014 192 MobiDBLite consensus disorder prediction 51 91 - -
Alju1000605g0014 192 FunFam FACT complex subunit SSRP1 73 165 - -
Alju1000605g0014 192 MobiDBLite consensus disorder prediction 142 192 - -
Alju1000605g0014 192 SMART hmgende2 89 159 IPR009071 -
Alju1000605g0014 192 MobiDBLite consensus disorder prediction 177 192 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000605g0014 86 158 ARID Transcription Factor Family AT1G76110 32.877 9.38e-08 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Alju1000605g0014 HMG_box 2.7e-23 CL0114