Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000557g0005 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAGATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAATCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATCTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAACTAGAAAAAGGAAAAAATATAGTAAGAATTTGATTCTTCGTCGCCGTAGTAAATAG 927 0.4304 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATIGQVGNVGVNQKSLGRAGSKSWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRTRKRKKYSKNLILRRRSK 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000557g0005 308 SUPERFAMILY Nucleic acid-binding proteins 2 123 IPR012340 -
Alju1000557g0005 308 Gene3D - 116 227 IPR014722 -
Alju1000557g0005 308 SMART Ribosomal_L2_C_2 122 285 IPR022669 GO:0003735|GO:0005840|GO:0006412
Alju1000557g0005 308 MobiDBLite consensus disorder prediction 288 308 - -
Alju1000557g0005 308 NCBIfam 50S ribosomal protein L2 165 307 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Alju1000557g0005 308 Hamap 50S ribosomal protein L2 [rplB]. 1 307 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Alju1000557g0005 308 FunFam 50S ribosomal protein L2, chloroplastic 153 228 - -
Alju1000557g0005 308 ProSitePatterns Ribosomal protein L2 signature. 250 261 IPR022671 GO:0003735|GO:0005840|GO:0006412
Alju1000557g0005 308 SMART Ribosomal_L2_2 40 116 IPR002171 GO:0003735|GO:0005840|GO:0006412
Alju1000557g0005 308 Pfam Ribosomal Proteins L2, RNA binding domain 40 116 IPR022666 GO:0003735|GO:0005840|GO:0006412
Alju1000557g0005 308 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 13 138 IPR002171 GO:0003735|GO:0005840|GO:0006412
Alju1000557g0005 308 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 163 308 IPR002171 GO:0003735|GO:0005840|GO:0006412
Alju1000557g0005 308 Pfam Ribosomal Proteins L2, C-terminal domain 166 283 IPR022669 GO:0003735|GO:0005840|GO:0006412
Alju1000557g0005 308 FunFam 50S ribosomal protein L2 228 308 - -
Alju1000557g0005 308 Gene3D - 1 112 IPR012340 -
Alju1000557g0005 308 PANTHER RIBOSOMAL PROTEIN L2 36 307 IPR002171 GO:0003735|GO:0005840|GO:0006412
Alju1000557g0005 308 MobiDBLite consensus disorder prediction 258 308 - -
Alju1000557g0005 308 FunFam 50S ribosomal protein L2, chloroplastic 1 112 - -
Alju1000557g0005 308 Gene3D Ribosomal protein L2, domain 3 228 307 IPR014726 -
Alju1000557g0005 308 MobiDBLite consensus disorder prediction 1 25 - -
Alju1000557g0005 308 SUPERFAMILY Translation proteins SH3-like domain 166 305 IPR008991 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000557g0005 51 267 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 31.878 1.58e-22 92.8