Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000556g0004 ATGGACGAACCATTGTGCTGCGTGCCAATCATTTCCAAGTCACCATGCCCCGTGGATATGTTCATCATTATGATATTAATATTCAGCCGGACAAGTGTCCTAGGAAAGTCAATCGTGAGATTATTGAAACTATGGTGCAGCTTACAGCAAATTTTTGGTACACTTAGACCTGTTTTTGATGGGCGGAACAATTTGTATACACGTGATCCTCTTCCTATTGGCAATGACAGAGTAGAGTTAGAGGTGACTTTGCCAGGTGAAGGTAAAGATCGTGTGTTTCGTGTGAATATTAAATGGGTGGCCCAAGTATCTCTCTTTGCTTTGGAAGAAGCTCTTGAAGGCCGCACAAGACAGATTCCATATGATGCTATTTTGGCTCTTGATGTTGTCATGAGGCATCTTCCATCCATGACTTATACGCCAGTGGGTAGATCATTCTTTTCATCTCCTGATGGCTACTATCATCCTCTCGGTGGAGGTCGTGAGGTTTGGTTTGGTTTCCATCAGTCTGTACGGCCAAGTCAGTGGAAGATGATGTTGAACATTGATGTTTCTGCCACTGCATTTTACAAAGCTCAACCTGTCATTGAGTTTATGTGTGAGGTTTTGGATATCAGAGATATTAATGAGCAGAGGAAGCCATTAACTGACTCACAACGTGTGAAATTTACTAAAGAAATTAAGGGTTTGAAGATTGAAATCACGCATTGTGGCACAATGCGGCGTAAATACAGAGTTTGCAACGTTACTCGCAGGCCTTCCCAGATGCAATCATTCCCATTACAACTTGAAAATGGACAGACTGTGGAATGCACAGTTGCAAAATATTTCCTTGACAAGTACAAGATGAAATTAAGGTATCCACATCTTCCATGTCTTCAAGTGGGGCAAGAGCACAAGCACACTTATCTTCCATTAGAGGCTAAACAGCAAGCGCTGCCAATCCAAGGAGTGTGGGACATGCGTGGAAAGCAGTTCTACACTGGCGTTGAAATTCGTGTGTGGGCTATTGCCTGCTTTGCCCCTCAACGTACAGTCCGAGAAGATGCCCTAAGGCTCTTTACCCAAAACTTGCAAAAAATCAGCAATGATGCTGGTATGCCTATCATTGGTCAGCCATGTTTCTGCAAGTATGCCACTGGACCTGATCAGGTTGAACCTATGTTCAGGTACCTGAAGACTACGTTTCAGGCATTACAGTTAGTGGTGGTTGTTTTGCCTGGTAAAACTCCTGTGTATGCTGAAGTGAAAAGAGTGGGTGACACAGTGATGGGTATGGCAACACAGTGTGTTCAAGCCAAAAATGTTAACAAAACCTCACCTCAGACATTATCAAACTTGTGCCTCAAGATTAATGTCAAATTGGGTGGAATCAATAGCATCTTAGTTCCAAGCATTCGGCCCAAAGTATTTAATGAACCAGTTATTTTCCTCGGATCTGATGTTACTCATCCACCTGCTGGTGATAACAAGAAGCCATCCATCGCTGCTGTGGTTGGTCAATTCCTCGCAGTTTTGCAACATGAATTGACAGCCATTCGAGAAGCTTGTATCAAATTAGAAGGAGATTACAAGCCTGGTATTACCTTCATTGTCGTGCAAAAGAGACATCACACCAGGTTATTCTGTGCTGAGAAGAAAGAGCAGTCTGGAAAATCTGGCAACATTCCCGCTGGAACGACAGTTGATGTTGGTATCACTCATCCAACAGAGTTTGACTTTTATCTCTGCAGTCACCAGGGAATTCAAGGCACAAGTCGTCCCAGTCATTATCATGTCCTGTGGGATGACAATCACTTTGACTCAGATGAACTTCAATGTTTGACTTACCAACTCTGCCACACATACGTCCGATGTACTCGTTCTGTATCCATACCTGCACCAGCATACTATGCTCATCTCGTGGCTTTTCGAGCTCGATATCATTTGGTGGAGAAAGAGCACGACAGTGGAGAGGGCTCACACCAGTCAGGCTGCAGTGAAGATAGAACTCCAGGTGCAATGGCCCGAGCCATCACTGTTCATGCTGATACCAAGAAAGTTATGTACTTTGCGTAA 2058 0.4383 MDEPLCCVPIISKSPCPVDMFIIMILIFSRTSVLGKSIVRLLKLWCSLQQIFGTLRPVFDGRNNLYTRDPLPIGNDRVELEVTLPGEGKDRVFRVNIKWVAQVSLFALEEALEGRTRQIPYDAILALDVVMRHLPSMTYTPVGRSFFSSPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMRRKYRVCNVTRRPSQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRYPHLPCLQVGQEHKHTYLPLEAKQQALPIQGVWDMRGKQFYTGVEIRVWAIACFAPQRTVREDALRLFTQNLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKTTFQALQLVVVVLPGKTPVYAEVKRVGDTVMGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFLGSDVTHPPAGDNKKPSIAAVVGQFLAVLQHELTAIREACIKLEGDYKPGITFIVVQKRHHTRLFCAEKKEQSGKSGNIPAGTTVDVGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDSDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGCSEDRTPGAMARAITVHADTKKVMYFA 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000556g0004 685 Gene3D paz domain 186 311 - -
Alju1000556g0004 685 Pfam Argonaute linker 1 domain 141 191 IPR014811 -
Alju1000556g0004 685 Gene3D - 466 500 IPR036397 GO:0003676
Alju1000556g0004 685 ProSiteProfiles Piwi domain profile. 401 499 IPR003165 GO:0003676
Alju1000556g0004 685 Pfam PAZ domain 211 307 IPR003100 GO:0005515
Alju1000556g0004 685 ProSiteProfiles Piwi domain profile. 500 644 IPR003165 GO:0003676
Alju1000556g0004 685 ProSiteProfiles PAZ domain profile. 193 308 IPR003100 GO:0005515
Alju1000556g0004 685 Gene3D - 331 459 - -
Alju1000556g0004 685 SMART Piwi_a_2 401 644 IPR003165 GO:0003676
Alju1000556g0004 685 FunFam Protein argonaute-2 290 465 - -
Alju1000556g0004 685 Pfam Piwi domain 500 643 IPR003165 GO:0003676
Alju1000556g0004 685 SMART DUF1785_2 140 192 IPR014811 -
Alju1000556g0004 685 SUPERFAMILY Ribonuclease H-like 398 645 IPR012337 -
Alju1000556g0004 685 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 500 642 - -
Alju1000556g0004 685 Gene3D - 501 685 IPR036397 GO:0003676
Alju1000556g0004 685 FunFam Protein argonaute-2 186 313 - -
Alju1000556g0004 685 CDD PAZ_argonaute_like 192 307 - -
Alju1000556g0004 685 Pfam Mid domain of argonaute 314 394 IPR032473 -
Alju1000556g0004 685 Pfam N-terminal domain of argonaute 34 131 IPR032474 -
Alju1000556g0004 685 SUPERFAMILY PAZ domain 68 308 IPR036085 GO:0005515
Alju1000556g0004 685 CDD Piwi_ago-like 309 643 IPR045246 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000556g0004 500 684 Eukaryotic Initiation Factors Gene Family AT1G48410 54.315 1.91e-59 214