Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000547g0001 ATGGGGATTGTAATTCTTTCTACTTCTCGAGGTATAATGACAGATCGAGAGGCTCGATTAGAAAGAATCGGCGGAGAAATCTTATGTTATATATGAAATGGACGTATTGGTTCACGTAAGAATGCGCGAAAAATACCAAAGGGAGTTATTCATGTTCAAGCTAGTTTTAACAATACCATTGTGACTATTACAGATGTACGGGGTCAGGTGATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAGGGTACAAGAAGGGGGACACCTTTTGCCGCTCAAACCGCAGCAGTAAATGCTATTCGGACAGTAGCGGATCAAGGTATGCAACGAGCAGAAGTCAGGATAAAAGGTCCCGGTCTCGGAAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGAGAAAGTAAAAGCATCCACTCGGACACTGCAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTAGGAAAGGTCAAGCCGACACAATAGGCATTGCGATGCGAAGAGCTTTGCTCGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAGAAAATACCACATGAATATTCTACCATAGCGGAATTGCCTCCCAGGATCTATAATTGTCTCAAAAGGTCCAATATATATACATTATTGGAGCTTTTGAATAACAGTCAAGAAGACCTTATGAAAATGGAACATCTTCGCATAGAAGATGTAAAACGTATATTGGACATTTTAGAAAAAGAAAAGCATTTTGCATAA 786 0.4122 MGIVILSTSRGIMTDREARLERIGGEILCYIXNGRIGSRKNARKIPKGVIHVQASFNNTIVTITDVRGQVISWSSAGTCGFKGTRRGTPFAAQTAAVNAIRTVADQGMQRAEVRIKGPGLGRDAALRAIRRSEKVKASTRTLQWKCVESRADSKRLYYGRFILSPLRKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEYSTIAELPPRIYNCLKRSNIYTLLELLNNSQEDLMKMEHLRIEDVKRILDILEKEKHFA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000547g0001 261 Gene3D - 1 31 - -
Alju1000547g0001 261 Gene3D Ribosomal protein S11 34 159 IPR036967 GO:0003735|GO:0005840|GO:0006412
Alju1000547g0001 261 Pfam Bacterial RNA polymerase, alpha chain C terminal domain 208 255 IPR011260 GO:0003677|GO:0003899|GO:0006351
Alju1000547g0001 261 ProSitePatterns Ribosomal protein S8 signature. 2 19 IPR000630 GO:0003735|GO:0005840|GO:0006412
Alju1000547g0001 261 Gene3D - 205 259 - -
Alju1000547g0001 261 SUPERFAMILY C-terminal domain of RNA polymerase alpha subunit 208 256 - -
Alju1000547g0001 261 Hamap 30S ribosomal protein S11 [rpsK]. 16 169 IPR001971 GO:0003735|GO:0005840|GO:0006412
Alju1000547g0001 261 Pfam Ribosomal protein S8 1 31 IPR000630 GO:0003735|GO:0005840|GO:0006412
Alju1000547g0001 261 SUPERFAMILY RBP11-like subunits of RNA polymerase 142 192 IPR036603 GO:0006351|GO:0046983
Alju1000547g0001 261 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 46 134 IPR001971 GO:0003735|GO:0005840|GO:0006412
Alju1000547g0001 261 Pfam Ribosomal protein S11 48 132 IPR001971 GO:0003735|GO:0005840|GO:0006412
Alju1000547g0001 261 SUPERFAMILY Ribosomal protein S8 1 31 IPR035987 GO:0003735|GO:0005840|GO:0006412
Alju1000547g0001 261 FunFam 30S ribosomal protein S8 1 32 - -
Alju1000547g0001 261 SUPERFAMILY Translational machinery components 43 133 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000547g0001 48 132 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 34.043 1.93e-07 47.8