Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000527g0019 ATGACGAAGTGCAGTGCCCCAAATTGTGAGAATAGTCTGAGGAGAGGCAATCTGGACTTCAGCTTTCATGACTCTGAAAATTTTCAGTTAGAGGAAGCTGTTGAGGGCACAGAGAATACACTTATAGAAATTCACCAGCAGCTCTCTAAAAATGACTCTGGGGCATGTGAAAATTTAGCAGTTCTAGAACCCAGCACCACAGATAACAAACTAGAAAGTGTTTTAATTTCTGAAGCTTCAAACATTTTAGAAGAAGGGTGCAGGAGACTTCTCAATTCATCGGACATTGCCACATCCCGCTTATGTTCCTCACTTCCCTCTATTGATTCAGAGACCTTTGCTGCAGAGGCCCCAGCCTCTCATTTTAGTGATAAAACAATGAACTTATTTAGTTCAGAAGCTGCTGAGTGTAGGGTTTTGGAAAGAATTTCCTCTTTCCTCCACATCAAGATTGTTCGAAGTGATGACCTGCCACAGAGTGTTTGCTCAGTCTGCTTAACCAAACTAGACACGTGTTCAGAATTAATAGTTACATCTTTCAATACCCATCAATTTCTTGCATCTGTTACTTGTGGGGATGTGGAGTATTCATCAAGATTACCTGTTCACTTTTCTGTTGCGGATGAAGGGTCTTCAAGAAATCCAGCTTTGAAGAGGCACATTTTACTCATGGACATGTATCATGAAGAGGGAAGGCCAATTGAAGAGTACCTCACAGCAGCCTGCAATGATCTCAACTCAAGATTGCATTCAAAGGATTTATGCAACAAACCCCTATGCAATCTATTGCTTGCTCCCATCTCAGACAATTGCTCAGTATCTGCGGCAGAACAAGCAAGGACAGCAGCTGAGGCCCTTTTTGCCAAAGGGCTAATTCAACATGTGAAAGAGAAGAAGCAGTACAAAAATTCAAATGTTTGGAGCACAACTCTGAATGAAGATGCAGCCTCTCCAAACAATCAGGCTGAAAGTTTGACCTTTCCAGAGGACTCGCCTTCAGAGGACATAGTTGAGGCTGTAGAACATAGTCCATCAGAAGATTGTAAGCACCAAGCAAATGCTACAAAAAATGACTCGGAATCAAGATTTAAGTCAATCCTCACTGAAGAAAAAATTGTAGGAAAATCTTCCTGTAAGAAACTGGCCTCTCATCGATACCAATGCTCACATTGCAGTGAACGTCTTGAATCCAAATTCATGCTCAAGCAGCATCTATCCCAACACCATGCCTCTGATTCCACAAAATGTGATGGTTGTAATTTTGAAACCTTAAATGTTTATGAGGCCGCTTTGCACCGTCAGATGTGCTCTCTAGTCAGAAAGATACCTGAATGGAAATGTCAAAACTGTTCACAAAGTTTTTCTTCACAGGTGAAATTGCAGGAGCATCAGGCTAGTCACAGTAATGAAGTACCTTCTTGGCTATGTGATGTATGTGGAAAGAGATACTCTGTAGCTGCAAAACTAAATGAACATAAAAAGTGCCATCTTCCTCCAGAGTTGAAGTATTTACACCAATGCTCTCAGTGTCCGAAGCGATATATGAACCTGTCAAGATTGAAAGAACATATGCAAAGGCATGACGAAAAGAAGTTTATGTGCAATGTTTGTGGCAAGATGTTTGGTACCAAACAAGTACTGCGTCAACATGAATCCACCCATGGGGATCCTCAGTATCTGTGTTCACTGTGCTCAAGGACATTTTTCCGCAAGAGTCATCTTTTGAAACATATGAATGTTCATAACCCTCTTAACCCAAGAACCAGTCGGTGTGGTCCACAACCACACAGGGATGGTCTGAATCGTTGCAGGGAATGTAGAAATGTTTTTGAGAACAACCTTCTTGAACATTACAAAACATGCCATCCTCACATTCCACTTCACAATTACATATGTGAAATTTGTAAAATGGAGAATACATCTTATGCAGAGCTTTTTCAACATCAGCGAGAAGTGCATAAGACAGGTGTCAAAGATTGTCCTTTCTGCAATAAAACTATAGATGGGTCAACTCAAATGAAATACCACCTCATGAAACATGAGGGCATGTTTCCTTATAATTGTCCATTATGTAACCATGGATATACTGCTAATAGCCTACTCCAAGATCATATGAGGAGGAAACATACTGGAGAAAAGCCATTTCAATGTCAACAGTGCTCAAAGTGTTTCCCTACCAATGGAGCCCTTGTGCAACACAGCACTGTTCATTCTTTGCCACATCAACTGCTTCCATGCCCAGTATGTAATCAAGGTTTCAAGCGCAAGGCACATTTAGATGTTCACTTACGAACCCACACTGGAGAGAAACCATATCCATGTCCTATTTGTGATCGGCCTTTTCGTCAGAGGCCAGATTGTGTAAAACATGTTCGAGTTATTCACGGAGAAGACCCCTCTAAGTTTAGGTTTCAATTCCTCTCAACTACAAGTGTTAACTTTCCCCAAGTAGTTTCAGTTGCCGAAATGGAATTAGTTCTTGAGGGTGAAGATCTTATGCAAACTTCCCTTGAATCTAGCAACATGATGGCCCTGGCCAGGCCTTGGGTCGCACCGTGGGGTGGCAAGATGGGGTGGTGCAACCAGACGGAAATTCTCGGTCAAGTTCAAAGGGATGGGTGTCGCGGATTCGGGGCGGGGGGAGGGAAGCTGGGAGCCGTTGTTCCAGTCGAACGAGCACACCCACAGCCAGGGCCTGGCACAGCCCGTGTGAGGAGGGAGTGCCAGTTGGCTGATAGAGGCCCGAGCGAGAGCGGTGCGCCCTGCCCTGCCTTAGCCCCCAGGTTCCAGCTGGCTCCAGCCCAGCCCGCCGCGTTGGCGCGGGGATTTGCCAGCGCCTGA 2841 0.4403 MTKCSAPNCENSLRRGNLDFSFHDSENFQLEEAVEGTENTLIEIHQQLSKNDSGACENLAVLEPSTTDNKLESVLISEASNILEEGCRRLLNSSDIATSRLCSSLPSIDSETFAAEAPASHFSDKTMNLFSSEAAECRVLERISSFLHIKIVRSDDLPQSVCSVCLTKLDTCSELIVTSFNTHQFLASVTCGDVEYSSRLPVHFSVADEGSSRNPALKRHILLMDMYHEEGRPIEEYLTAACNDLNSRLHSKDLCNKPLCNLLLAPISDNCSVSAAEQARTAAEALFAKGLIQHVKEKKQYKNSNVWSTTLNEDAASPNNQAESLTFPEDSPSEDIVEAVEHSPSEDCKHQANATKNDSESRFKSILTEEKIVGKSSCKKLASHRYQCSHCSERLESKFMLKQHLSQHHASDSTKCDGCNFETLNVYEAALHRQMCSLVRKIPEWKCQNCSQSFSSQVKLQEHQASHSNEVPSWLCDVCGKRYSVAAKLNEHKKCHLPPELKYLHQCSQCPKRYMNLSRLKEHMQRHDEKKFMCNVCGKMFGTKQVLRQHESTHGDPQYLCSLCSRTFFRKSHLLKHMNVHNPLNPRTSRCGPQPHRDGLNRCRECRNVFENNLLEHYKTCHPHIPLHNYICEICKMENTSYAELFQHQREVHKTGVKDCPFCNKTIDGSTQMKYHLMKHEGMFPYNCPLCNHGYTANSLLQDHMRRKHTGEKPFQCQQCSKCFPTNGALVQHSTVHSLPHQLLPCPVCNQGFKRKAHLDVHLRTHTGEKPYPCPICDRPFRQRPDCVKHVRVIHGEDPSKFRFQFLSTTSVNFPQVVSVAEMELVLEGEDLMQTSLESSNMMALARPWVAPWGGKMGWCNQTEILGQVQRDGCRGFGAGGGKLGAVVPVERAHPQPGPGTARVRRECQLADRGPSESGAPCPALAPRFQLAPAQPAALARGFASA 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000527g0019 946 ProSiteProfiles Zinc finger C2H2 type domain profile. 744 771 IPR013087 -
Alju1000527g0019 946 Gene3D Classic Zinc Finger 500 583 - -
Alju1000527g0019 946 ProSiteProfiles Zinc finger C2H2 type domain profile. 532 559 IPR013087 -
Alju1000527g0019 946 ProSitePatterns Zinc finger C2H2 type domain signature. 660 680 IPR013087 -
Alju1000527g0019 946 SUPERFAMILY beta-beta-alpha zinc fingers 445 496 IPR036236 -
Alju1000527g0019 946 ProSiteProfiles Zinc finger C2H2 type domain profile. 715 742 IPR013087 -
Alju1000527g0019 946 ProSiteProfiles ZAD domain profile. 97 189 IPR012934 GO:0005634|GO:0008270
Alju1000527g0019 946 ProSitePatterns Zinc finger C2H2 type domain signature. 388 409 IPR013087 -
Alju1000527g0019 946 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 127 187 - -
Alju1000527g0019 946 ProSiteProfiles Zinc finger C2H2 type domain profile. 658 685 IPR013087 -
Alju1000527g0019 946 ProSiteProfiles Zinc finger C2H2 type domain profile. 686 714 IPR013087 -
Alju1000527g0019 946 MobiDBLite consensus disorder prediction 312 360 - -
Alju1000527g0019 946 ProSitePatterns Zinc finger C2H2 type domain signature. 746 766 IPR013087 -
Alju1000527g0019 946 ProSitePatterns Zinc finger C2H2 type domain signature. 476 496 IPR013087 -
Alju1000527g0019 946 PANTHER ZINC FINGER PROTEIN 602 738 - -
Alju1000527g0019 946 FunFam Zinc finger protein 33A 745 798 - -
Alju1000527g0019 946 SUPERFAMILY beta-beta-alpha zinc fingers 745 792 IPR036236 -
Alju1000527g0019 946 ProSiteProfiles Zinc finger C2H2 type domain profile. 386 414 IPR013087 -
Alju1000527g0019 946 ProSitePatterns Zinc finger C2H2 type domain signature. 507 527 IPR013087 -
Alju1000527g0019 946 ProSitePatterns Zinc finger C2H2 type domain signature. 774 795 IPR013087 -
Alju1000527g0019 946 ProSiteProfiles Zinc finger C2H2 type domain profile. 559 586 IPR013087 -
Alju1000527g0019 946 ProSitePatterns Zinc finger C2H2 type domain signature. 688 709 IPR013087 -
Alju1000527g0019 946 Gene3D Classic Zinc Finger 769 799 - -
Alju1000527g0019 946 ProSiteProfiles Zinc finger C2H2 type domain profile. 630 653 IPR013087 -
Alju1000527g0019 946 SUPERFAMILY beta-beta-alpha zinc fingers 505 554 IPR036236 -
Alju1000527g0019 946 Gene3D Classic Zinc Finger 655 709 - -
Alju1000527g0019 946 Pfam Zinc finger, C2H2 type 715 737 IPR013087 -
Alju1000527g0019 946 Pfam Zinc finger, C2H2 type 745 766 IPR013087 -
Alju1000527g0019 946 Pfam Zinc finger, C2H2 type 559 581 IPR013087 -
Alju1000527g0019 946 Pfam Zinc finger, C2H2 type 446 467 IPR013087 -
Alju1000527g0019 946 Pfam Zinc finger, C2H2 type 772 795 IPR013087 -
Alju1000527g0019 946 Pfam Zinc finger, C2H2 type 686 709 IPR013087 -
Alju1000527g0019 946 Gene3D - 118 188 - -
Alju1000527g0019 946 ProSiteProfiles Zinc finger C2H2 type domain profile. 474 496 IPR013087 -
Alju1000527g0019 946 ProSiteProfiles Zinc finger C2H2 type domain profile. 505 532 IPR013087 -
Alju1000527g0019 946 SMART c2h2final6 445 467 IPR013087 -
Alju1000527g0019 946 SMART c2h2final6 772 795 IPR013087 -
Alju1000527g0019 946 SMART c2h2final6 559 581 IPR013087 -
Alju1000527g0019 946 SMART c2h2final6 474 496 IPR013087 -
Alju1000527g0019 946 SMART c2h2final6 744 766 IPR013087 -
Alju1000527g0019 946 SMART c2h2final6 532 554 IPR013087 -
Alju1000527g0019 946 SMART c2h2final6 630 653 IPR013087 -
Alju1000527g0019 946 SMART c2h2final6 715 737 IPR013087 -
Alju1000527g0019 946 SMART c2h2final6 658 680 IPR013087 -
Alju1000527g0019 946 SMART c2h2final6 601 622 IPR013087 -
Alju1000527g0019 946 SMART c2h2final6 386 408 IPR013087 -
Alju1000527g0019 946 SMART c2h2final6 686 709 IPR013087 -
Alju1000527g0019 946 SMART c2h2final6 505 527 IPR013087 -
Alju1000527g0019 946 SUPERFAMILY beta-beta-alpha zinc fingers 671 724 IPR036236 -
Alju1000527g0019 946 MobiDBLite consensus disorder prediction 312 328 - -
Alju1000527g0019 946 ProSiteProfiles Zinc finger C2H2 type domain profile. 772 799 IPR013087 -
Alju1000527g0019 946 ProSitePatterns Zinc finger C2H2 type domain signature. 561 581 IPR013087 -
Alju1000527g0019 946 FunFam Datilografo, isoform A 529 556 - -
Alju1000527g0019 946 ProSitePatterns Zinc finger C2H2 type domain signature. 717 737 IPR013087 -
Alju1000527g0019 946 MobiDBLite consensus disorder prediction 335 360 - -
Alju1000527g0019 946 FunFam zinc finger protein 697 708 737 - -
Alju1000527g0019 946 Gene3D Classic Zinc Finger 443 496 - -
Alju1000527g0019 946 Gene3D Classic Zinc Finger 740 768 - -
Alju1000527g0019 946 ProSiteProfiles Zinc finger C2H2 type domain profile. 445 472 IPR013087 -
Alju1000527g0019 946 ProSitePatterns Zinc finger C2H2 type domain signature. 447 467 IPR013087 -
Alju1000527g0019 946 SUPERFAMILY beta-beta-alpha zinc fingers 541 586 IPR036236 -
Alju1000527g0019 946 Gene3D Classic Zinc Finger 710 739 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000527g0019 474 600 IDZ Gene Family AT5G44160 26.897 7.33e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju1000527g0019 zf-C2H2 0.0018 CL0361