Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000491g0010 ATGTGTATTCGAATCATAGGAACTAGTAATCGACGATATGCCTATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGCGGTACCAAATACACCGTTAGAAAAATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGTAACAACGGTATGATAATACAATATGATGATAATGCTGCAGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATCGCTCGAGAATTGAGACAGTTAAATTTCACTAAAATAGTTCGTTTCTATAATGAAAATAAGATTATAGATAATGAAAATATGGATTATAGGTGGTCATATGTACGGGGTCAGGTGATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAGGGTACAAGAAGGGGGACACCTTTTGCCGCTCAAACCGCAGCAGTAAATGCTATTCGGACAGTAGCGGATCAAGGTATGCAACGAGCAGAAGTCAGGATAAAAGGTCCCGGTCTCGGAAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGAGAAAGTAAAAGCATCCACTCGGACACTGCAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTAGGAAAGGTCAAGCCGACACAATAGGCATTGCGATGCGAAGAGCTTTGCTCGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAGAAAATACCACATGAATATTCTACCATAGCGGGTATTCAAGAATCTGTACATGAAATTTTAATGAATTTGAAAAAAATTGTATTGAGAAGTAATCTCTATGGAACTCGGGACGCGTCTATTTGGGTCAAGGGTCATGGATATGTAACTGCTCAAGACATAATTTTACCACCTTCTGTGGAAATCGTTGACAATACACAACATATAGCTAACCTAACGGAACCTATCAACTTGTGTATTGGATTAAAAATCGAGAGGAATCGCGGATATCGTATAAAAACACTAAATACCTTTCAAGACGGAAGTTATCCTATAGATGCTGTATTCATGCCTGTTCGAAATGCAAATTTTAGTATTCATTCTTATGTGAATGGGAATGAAAAACAAGAGATACTTTTTCTCGAAATATGGACAAATGGAAGTTTAACTCCTAAAGAAGCACTTTATGAAGCCTCCCGGAATTTGATTGATTTATTTATTCCTTTTTTACATGCGGACGAAAAAAACTTAAATTTAGAAAACAATCAAGACAAAGTTACTTTACCCCTTTTTACTTTTCATGATGGATTGGCAAAACTAAGGAAAAATAAAAAAGAAATAGCATTGAAATCCATTTTTATTGACCAATTAGAATTGCCTCCCAGGATCTATAATTGTCTCAAAAGGTCCAATATATATACATTATTGGAGCTTTTGAATAACAGTCAAGAAGACCTTATGAAAATGGAACATCTTCGCATAGAAGATGTAAAACGTATATTGGACATTTTAGAAAAAGAAAAGCATTTTGCATAA 1536 0.3659 MCIRIIGTSNRRYAYIGDVIVAVIKKAVPNTPLEKSEVIRAVIVRTCKELKRNNGMIIQYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVRFYNENKIIDNENMDYRWSYVRGQVISWSSAGTCGFKGTRRGTPFAAQTAAVNAIRTVADQGMQRAEVRIKGPGLGRDAALRAIRRSEKVKASTRTLQWKCVESRADSKRLYYGRFILSPLRKGQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEYSTIAGIQESVHEILMNLKKIVLRSNLYGTRDASIWVKGHGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIGLKIERNRGYRIKTLNTFQDGSYPIDAVFMPVRNANFSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHADEKNLNLENNQDKVTLPLFTFHDGLAKLRKNKKEIALKSIFIDQLELPPRIYNCLKRSNIYTLLELLNNSQEDLMKMEHLRIEDVKRILDILEKEKHFA 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000491g0010 511 Gene3D Ribosomal protein S11 105 209 IPR036967 GO:0003735|GO:0005840|GO:0006412
Alju1000491g0010 511 Pfam Bacterial RNA polymerase, alpha chain C terminal domain 443 505 IPR011260 GO:0003677|GO:0003899|GO:0006351
Alju1000491g0010 511 Gene3D - 210 403 IPR036603 GO:0006351|GO:0046983
Alju1000491g0010 511 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 216 405 IPR011263 GO:0003899|GO:0006351
Alju1000491g0010 511 ProSitePatterns Ribosomal protein L14 signature. 41 67 IPR019972 -
Alju1000491g0010 511 FunFam DNA-directed RNA polymerase subunit alpha 239 356 - -
Alju1000491g0010 511 Hamap 50S ribosomal protein L14 [rplN]. 2 105 IPR000218 GO:0003735|GO:0005840|GO:0006412
Alju1000491g0010 511 Gene3D - 449 509 - -
Alju1000491g0010 511 FunFam Ribosomal protein L14 31 102 - -
Alju1000491g0010 511 Pfam Ribosomal protein L14p/L23e 1 97 IPR000218 GO:0003735|GO:0005840|GO:0006412
Alju1000491g0010 511 NCBIfam 50S ribosomal protein L14 1 97 IPR005745 GO:0003735|GO:0006412|GO:0015934
Alju1000491g0010 511 Gene3D - 239 356 IPR036643 -
Alju1000491g0010 511 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 99 IPR000218 GO:0003735|GO:0005840|GO:0006412
Alju1000491g0010 511 SMART Ribosomal_L14_2 1 103 IPR000218 GO:0003735|GO:0005840|GO:0006412
Alju1000491g0010 511 SUPERFAMILY Translational machinery components 116 184 - -
Alju1000491g0010 511 Pfam RNA polymerase Rpb3/RpoA insert domain 246 338 IPR011262 GO:0003899|GO:0006351|GO:0046983
Alju1000491g0010 511 SUPERFAMILY RBP11-like subunits of RNA polymerase 193 411 IPR036603 GO:0006351|GO:0046983
Alju1000491g0010 511 Hamap DNA-directed RNA polymerase subunit alpha [rpoA]. 186 510 IPR011773 GO:0003677|GO:0003899|GO:0006351
Alju1000491g0010 511 CDD RNAP_alpha_NTD 200 409 - -
Alju1000491g0010 511 Gene3D Ribosomal protein L14 1 100 IPR036853 GO:0003735|GO:0005840|GO:0006412
Alju1000491g0010 511 Pfam Ribosomal protein S11 117 183 IPR001971 GO:0003735|GO:0005840|GO:0006412
Alju1000491g0010 511 SUPERFAMILY C-terminal domain of RNA polymerase alpha subunit 448 506 - -
Alju1000491g0010 511 SMART rpoldneu2 209 412 IPR011263 GO:0003899|GO:0006351
Alju1000491g0010 511 SUPERFAMILY Ribosomal protein L14 1 97 IPR036853 GO:0003735|GO:0005840|GO:0006412
Alju1000491g0010 511 NCBIfam DNA-directed RNA polymerase subunit alpha 209 506 IPR011773 GO:0003677|GO:0003899|GO:0006351
Alju1000491g0010 511 Hamap 30S ribosomal protein S11 [rpsK]. 35 220 IPR001971 GO:0003735|GO:0005840|GO:0006412
Alju1000491g0010 511 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 239 357 IPR036643 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000491g0010 14 90 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 36.364 1.65e-10 57.0