Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju1000491g0005 ATGTCGCGTTACAGAGGGCCTCGTTTCAAAAAAATACGCCGGCTGGGGGCTTTACCAGGACTAACTAGTAAAAAGCCTATAGTCGGAAGCGAACTTAGAAACCAAGCGCGCTTGGATAATAAAAAATCTCAATATTGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTACAGAACGACAATTGCTTAAATACGTTGGTATCGCCAGAAAAGCGAAAGGGTCAACCGGTCAGGTTTTACTACAATTACTCGAAATGCGTTTGGATAACATACTTTTCCGATTGGGTATGGCTTCCACTATTCCTCAAGCTCGCCAATTAGTTAACCATAGACATGTTTTAGTTAATGGTCGTATAGTAGATATACCAAGTTATCGCTGCAAACCCCAAGATATTATTACAGCGAGGGATGAACAAAAGTCTAGAACTCTGATTCAAAATTATCTTGATTCATCCCCCCGTGAGGAATTGCCAAAACATTTGACTCTTCACCCATTCCAATATAAAGGATTAGTCAATCAAATAATAGATAGTAAATGGGTTGGTTTGAAAATAAATGAATTGCTGGTTGTAGAATATTATTCTCGTCAGACTTAA 609 0.376 MSRYRGPRFKKIRRLGALPGLTSKKPIVGSELRNQARLDNKKSQYCIRLEEKQKLRFHYGLTERQLLKYVGIARKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHVLVNGRIVDIPSYRCKPQDIITARDEQKSRTLIQNYLDSSPREELPKHLTLHPFQYKGLVNQIIDSKWVGLKINELLVVEYYSRQT 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju1000491g0005 202 Gene3D - 89 185 IPR036986 GO:0003723
Alju1000491g0005 202 Hamap 30S ribosomal protein S4 [rpsD]. 1 200 IPR005709 GO:0003735|GO:0006412|GO:0015935
Alju1000491g0005 202 ProSitePatterns Ribosomal protein S4 signature. 88 112 IPR018079 GO:0019843
Alju1000491g0005 202 Pfam Ribosomal protein S4/S9 N-terminal domain 3 89 IPR001912 GO:0019843
Alju1000491g0005 202 ProSiteProfiles S4 RNA-binding domain profile. 90 153 - -
Alju1000491g0005 202 CDD S4 90 149 - -
Alju1000491g0005 202 SMART Ribosomal_S4_2 3 89 IPR001912 GO:0019843
Alju1000491g0005 202 FunFam 30S ribosomal protein S4, chloroplastic 89 185 - -
Alju1000491g0005 202 PANTHER 30S 40S RIBOSOMAL PROTEIN 27 155 IPR022801 GO:0003735|GO:0015935|GO:0019843
Alju1000491g0005 202 SMART s4_6 90 153 IPR002942 GO:0003723
Alju1000491g0005 202 FunFam 30S ribosomal protein S4, chloroplastic 3 99 - -
Alju1000491g0005 202 Gene3D Ribosomal Protein S4 Delta 41; Chain A, domain 1 3 200 - -
Alju1000491g0005 202 Pfam S4 domain 90 137 IPR002942 GO:0003723
Alju1000491g0005 202 SUPERFAMILY Alpha-L RNA-binding motif 3 200 - -
Alju1000491g0005 202 NCBIfam 30S ribosomal protein S4 3 200 IPR005709 GO:0003735|GO:0006412|GO:0015935
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju1000491g0005 87 129 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 46.512 2.25e-06 44.7